Wall clock time and date at job start Mon Mar 30 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36080 * 116.99692 * 2 1 4 4 C 1.39537 * 119.91539 * 89.99739 * 3 2 1 5 5 O 1.34889 * 133.04635 * 0.02562 * 4 3 2 6 6 C 1.34488 * 110.94707 * 179.97438 * 5 4 3 7 7 C 1.33888 * 110.27472 * 359.97438 * 6 5 4 8 8 C 1.50696 * 126.90722 * 180.02562 * 7 6 5 9 9 C 1.40912 * 119.79494 * 179.97438 * 4 3 2 10 10 C 1.38783 * 120.52590 * 0.02562 * 9 4 3 11 11 C 1.40435 * 119.54061 * 0.02562 * 10 9 4 12 12 C 1.41186 * 120.14717 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00191 * 155.06620 * 12 11 10 14 14 C 1.39856 * 120.00149 * 335.34479 * 12 11 10 15 15 N 1.30919 * 119.99915 * 341.93289 * 14 12 11 16 16 Si 1.86801 * 120.00313 * 161.93601 * 14 12 11 17 17 H 1.48500 * 109.47058 * 59.99491 * 16 14 12 18 18 H 1.48498 * 109.47224 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46993 * 299.99776 * 16 14 12 20 20 C 1.38143 * 119.90902 * 270.26038 * 3 2 1 21 21 O 1.35834 * 119.87323 * 0.02562 * 20 3 2 22 22 H 1.09004 * 109.46902 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47112 * 300.00135 * 1 2 3 24 24 H 1.08999 * 109.46825 * 60.00291 * 1 2 3 25 25 H 1.08002 * 124.86294 * 179.97438 * 6 5 4 26 26 H 1.09006 * 109.47004 * 269.97310 * 8 7 6 27 27 H 1.09003 * 109.47538 * 29.97127 * 8 7 6 28 28 H 1.08998 * 109.47062 * 149.97361 * 8 7 6 29 29 H 1.08004 * 120.23190 * 180.02562 * 10 9 4 30 30 H 0.97000 * 119.99908 * 180.02562 * 15 14 12 31 31 H 0.96697 * 114.00648 * 274.07954 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 2.3626 1.8326 1.2095 5 8 2.1836 1.4803 2.4991 6 6 2.6650 2.4246 3.3269 7 6 3.1822 3.4390 2.6225 8 6 3.8202 4.6891 3.1712 9 6 3.0028 3.0879 1.2065 10 6 3.3217 3.7138 0.0095 11 6 3.0015 3.0875 -1.2060 12 6 3.3196 3.7130 -2.4312 13 1 3.4579 3.1175 -3.3216 14 6 3.4612 5.1030 -2.4907 15 7 2.9677 5.8527 -1.5376 16 14 4.3547 5.8902 -3.9300 17 1 3.6557 5.5463 -5.1943 18 1 4.3680 7.3650 -3.7576 19 1 5.7500 5.3848 -3.9826 20 6 2.3546 1.8287 -1.1974 21 8 2.0391 1.2223 -2.3712 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.6382 2.3722 4.4053 26 1 3.0586 5.4577 3.3034 27 1 4.2843 4.4685 4.1325 28 1 4.5791 5.0456 2.4747 29 1 3.8127 4.6757 0.0128 30 1 3.0656 6.8169 -1.5791 31 1 2.7081 0.5979 -2.6837 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261069470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:12 Heat of formation + Delta-G solvation = -84.218615 kcal Electronic energy + Delta-G solvation = -18023.991393 eV Core-core repulsion = 15043.389112 eV Total energy + Delta-G solvation = -2980.602280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.92933 -40.24922 -38.36289 -36.82395 -35.18412 -34.10894 -31.11650 -29.75329 -27.82332 -27.57163 -27.16842 -23.54945 -22.79135 -20.80046 -19.64581 -18.89327 -18.23994 -17.61091 -17.27840 -16.89428 -16.39468 -16.05497 -15.83891 -15.18659 -14.74408 -14.44456 -14.14294 -13.90304 -13.45340 -13.27873 -13.12025 -12.82600 -12.70803 -12.51066 -12.29833 -12.04415 -11.83067 -11.43187 -11.01529 -10.73687 -10.29727 -9.29820 -8.74987 -8.58999 -6.35552 0.18660 0.72163 1.38579 1.44546 1.51422 1.59335 2.16331 2.19752 2.51183 2.88366 3.42436 3.73893 3.94503 4.13512 4.32224 4.38516 4.50309 4.62876 4.73228 4.82984 4.88462 4.93796 5.05159 5.17530 5.20427 5.27517 5.57012 5.75105 5.87475 5.95416 6.20822 6.39934 6.64648 6.73425 6.80672 7.19862 8.27773 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.009535 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.218977 B = 2935.886741 C = 4175.735761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.347 6.347 3 C 0.087 3.913 4 C -0.083 4.083 5 O -0.213 6.213 6 C 0.001 3.999 7 C -0.216 4.216 8 C -0.067 4.067 9 C -0.107 4.107 10 C -0.155 4.155 11 C 0.060 3.940 12 C -0.473 4.473 13 H 0.084 0.916 14 C 0.034 3.966 15 N -0.818 5.818 16 Si 0.986 3.014 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.258 1.258 20 C 0.008 3.992 21 O -0.484 6.484 22 H 0.123 0.877 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.248 0.752 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.291 0.709 31 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -2.270 5.198 5.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.264 6.264 3 C 0.043 3.957 4 C -0.129 4.129 5 O -0.116 6.116 6 C -0.063 4.063 7 C -0.217 4.217 8 C -0.124 4.124 9 C -0.108 4.108 10 C -0.175 4.175 11 C 0.057 3.943 12 C -0.501 4.501 13 H 0.102 0.898 14 C -0.182 4.182 15 N -0.444 5.444 16 Si 0.806 3.194 17 H -0.185 1.185 18 H -0.190 1.190 19 H -0.182 1.182 20 C -0.039 4.039 21 O -0.294 6.294 22 H 0.141 0.859 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.264 0.736 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.005 -2.108 5.365 5.764 hybrid contribution 0.442 0.375 -0.756 0.953 sum 0.447 -1.733 4.608 4.944 Atomic orbital electron populations 1.23077 0.78290 1.04253 0.99904 1.85899 1.21148 1.24981 1.94380 1.17675 1.02728 0.87026 0.88317 1.19535 1.12542 0.97435 0.83424 1.83860 1.69580 1.44171 1.14037 1.24397 0.98064 0.86930 0.96885 1.21522 1.08809 1.00952 0.90455 1.20072 0.99377 0.92090 1.00836 1.20066 1.01509 0.94391 0.94830 1.20530 1.06357 1.01465 0.89169 1.17979 0.90407 0.91268 0.94652 1.19554 1.42398 0.92717 0.95441 0.89790 1.26805 0.93485 0.97496 1.00402 1.69904 1.33048 1.07518 1.33923 0.85187 0.79346 0.77259 0.77572 1.18486 1.19042 1.18170 1.18607 1.06731 0.95086 0.83428 1.84685 1.47840 1.60703 1.36131 0.85890 0.94585 0.94323 0.73575 0.91394 0.88577 0.93107 0.86482 0.89811 0.76228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 11.13 113.37 1.26 2.63 16 2 O -0.35 -15.41 10.17 -79.61 -0.81 -16.22 16 3 C 0.09 4.33 5.73 22.56 0.13 4.46 16 4 C -0.08 -4.12 7.35 23.24 0.17 -3.95 16 5 O -0.21 -9.22 10.58 -10.13 -0.11 -9.33 16 6 C 0.00 0.05 11.88 66.83 0.79 0.84 16 7 C -0.22 -8.48 6.36 -18.56 -0.12 -8.60 16 8 C -0.07 -2.05 10.43 71.23 0.74 -1.31 16 9 C -0.11 -5.33 6.36 -20.20 -0.13 -5.45 16 10 C -0.16 -8.40 8.73 22.94 0.20 -8.20 16 11 C 0.06 3.31 5.58 -21.21 -0.12 3.19 16 12 C -0.47 -25.30 8.70 23.39 0.20 -25.10 16 13 H 0.08 4.31 7.64 -2.91 -0.02 4.29 16 14 C 0.03 1.68 5.13 85.22 0.44 2.12 16 15 N -0.82 -42.31 10.98 21.82 0.24 -42.07 16 16 Si 0.99 37.50 29.60 68.60 2.03 39.53 16 17 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 18 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 C 0.01 0.40 6.73 23.06 0.16 0.55 16 21 O -0.48 -22.38 12.51 -76.92 -0.96 -23.34 16 22 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 23 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.25 5.21 8.06 -2.91 -0.02 5.18 16 26 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.12 6.48 6.17 -2.91 -0.02 6.47 16 30 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 31 H 0.38 14.04 9.06 -74.06 -0.67 13.37 16 Total: -1.00 -67.79 277.35 4.62 -63.17 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.50 Total: 27.09 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 3.73 Total: -38.82 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.24 Total: -42.07 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -1.88 Total: -48.89 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -67.79 4.62 -63.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.052 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds