Wall clock time and date at job start Mon Mar 30 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27935 * 124.23784 * 2 1 4 4 C 1.34662 * 117.84128 * 180.02562 * 3 2 1 5 5 C 1.40972 * 129.68646 * 179.97438 * 4 3 2 6 6 C 1.36175 * 120.42717 * 180.02562 * 5 4 3 7 7 C 1.38797 * 120.77674 * 359.72029 * 6 5 4 8 8 C 1.37659 * 120.06428 * 0.55825 * 7 6 5 9 9 C 1.50694 * 120.01855 * 179.72195 * 8 7 6 10 10 H 1.09000 * 109.46932 * 219.72620 * 9 8 7 11 11 N 1.46897 * 109.47771 * 339.72549 * 9 8 7 12 12 C 1.50697 * 109.47339 * 99.72876 * 9 8 7 13 13 H 1.08001 * 119.99749 * 335.56882 * 12 9 8 14 14 C 1.37881 * 120.00488 * 155.57093 * 12 9 8 15 15 N 1.31518 * 119.99512 * 6.99119 * 14 12 9 16 16 Si 1.86800 * 119.99953 * 186.99573 * 14 12 9 17 17 H 1.48503 * 109.46875 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47272 * 299.99657 * 16 14 12 19 19 H 1.48500 * 109.47126 * 60.00252 * 16 14 12 20 20 C 1.39334 * 119.95597 * 359.45021 * 8 7 6 21 21 S 1.70643 * 124.23726 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47584 * 269.98351 * 1 2 3 23 23 H 1.09006 * 109.46917 * 29.98186 * 1 2 3 24 24 H 1.09004 * 109.47304 * 149.98055 * 1 2 3 25 25 H 1.07999 * 119.78648 * 0.02562 * 5 4 3 26 26 H 1.07993 * 119.61295 * 179.97438 * 6 5 4 27 27 H 1.07998 * 119.96446 * 180.30526 * 7 6 5 28 28 H 1.00905 * 110.99840 * 67.00200 * 11 9 8 29 29 H 1.00899 * 111.00679 * 190.95668 * 11 9 8 30 30 H 0.96995 * 119.99997 * 355.42006 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2268 1.0577 0.0000 4 6 3.5650 0.9076 -0.0005 5 6 4.5805 1.8854 -0.0011 6 6 5.8917 1.5179 -0.0022 7 6 6.2538 0.1781 0.0032 8 6 5.2836 -0.7985 -0.0019 9 6 5.6779 -2.2530 -0.0024 10 1 5.0127 -2.8095 -0.6626 11 7 7.0618 -2.3851 -0.4771 12 6 5.5721 -2.8026 1.3968 13 1 5.6445 -2.1379 2.2449 14 6 5.3830 -4.1540 1.5942 15 7 5.4322 -4.9810 0.5727 16 14 5.0568 -4.8102 3.3125 17 1 4.8892 -6.2847 3.2556 18 1 6.2025 -4.4756 4.1960 19 1 3.8188 -4.1923 3.8516 20 6 3.9368 -0.4413 -0.0010 21 16 2.4671 -1.4107 -0.0006 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3634 -0.8898 -0.5141 25 1 4.3168 2.9327 -0.0008 26 1 6.6589 2.2780 -0.0030 27 1 7.2977 -0.0986 0.0073 28 1 7.7097 -1.9751 0.1788 29 1 7.2918 -3.3510 -0.6568 30 1 5.5352 -4.6344 -0.3273 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:15 Heat of formation + Delta-G solvation = 42.714813 kcal Electronic energy + Delta-G solvation = -15499.512454 eV Core-core repulsion = 12999.460042 eV Total energy + Delta-G solvation = -2500.052412 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88182 -37.11161 -34.81338 -31.75481 -31.21603 -29.76218 -27.63740 -25.67404 -23.55145 -22.95643 -20.69092 -20.14046 -17.74660 -16.88076 -16.03402 -15.50525 -14.98086 -14.69681 -14.14845 -13.87812 -13.17514 -13.01278 -12.67909 -12.60076 -12.51168 -12.23630 -11.91860 -11.13483 -10.98441 -10.95339 -10.72855 -10.24660 -9.79020 -9.67756 -9.33839 -9.17149 -8.71986 -8.08395 -7.61097 -7.29941 -6.54175 -4.35642 0.93818 1.75105 1.82452 2.36216 2.87113 3.32079 3.34967 3.52771 4.22784 4.25134 4.39480 5.08552 5.12718 5.31951 5.41492 5.51276 5.56319 5.71044 5.79357 5.91986 6.06081 6.30779 6.40952 6.58481 6.76239 6.94681 7.19024 7.33348 7.74855 8.05021 8.13156 8.33075 8.54107 8.62751 9.36537 10.77216 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.009594 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.032288 B = 2917.755941 C = 3797.848907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.057 3.943 3 N -0.478 5.478 4 C 0.074 3.926 5 C -0.097 4.097 6 C -0.104 4.104 7 C -0.111 4.111 8 C 0.024 3.976 9 C 0.221 3.779 10 H 0.053 0.947 11 N -0.853 5.853 12 C -0.622 4.622 13 H 0.050 0.950 14 C 0.032 3.968 15 N -0.900 5.900 16 Si 1.064 2.936 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.285 1.285 20 C -0.171 4.171 21 S 0.131 5.869 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.133 0.867 28 H 0.325 0.675 29 H 0.334 0.666 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 8.237 -1.008 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.227 4.227 3 N -0.193 5.193 4 C -0.046 4.046 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.134 4.134 8 C 0.019 3.981 9 C 0.111 3.889 10 H 0.071 0.929 11 N -0.380 5.380 12 C -0.662 4.662 13 H 0.069 0.931 14 C -0.174 4.174 15 N -0.535 5.535 16 Si 0.892 3.108 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.290 4.290 21 S 0.388 5.612 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.151 0.849 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.860 6.725 -0.794 8.955 hybrid contribution 1.010 1.595 0.135 1.893 sum -4.850 8.319 -0.659 9.652 Atomic orbital electron populations 1.20448 0.85615 1.03854 1.03734 1.26729 1.01631 0.92651 1.01657 1.66153 1.04307 1.31767 1.17077 1.19100 0.88903 0.91910 1.04675 1.20078 0.90734 0.97503 1.03561 1.20652 0.95267 0.96501 1.00004 1.20929 0.99765 0.91416 1.01284 1.19642 0.88692 0.98034 0.91720 1.18202 0.88310 0.86854 0.95526 0.92934 1.59537 1.05086 1.22481 1.50916 1.22409 1.56363 0.95575 0.91859 0.93117 1.25872 0.92713 0.93277 1.05556 1.70863 1.45262 1.37276 1.00109 0.83602 0.76896 0.76373 0.73971 1.20536 1.21329 1.21074 1.23592 0.98645 0.95737 1.11061 1.84257 0.95417 1.08622 1.72899 0.89712 0.89674 0.90104 0.85975 0.85762 0.84947 0.86439 0.85432 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.44 36.00 0.38 -0.53 16 2 C 0.06 0.98 7.29 -13.90 -0.10 0.88 16 3 N -0.48 -9.21 10.57 -9.08 -0.10 -9.31 16 4 C 0.07 1.51 7.00 -84.96 -0.59 0.91 16 5 C -0.10 -1.72 10.05 -39.29 -0.39 -2.12 16 6 C -0.10 -1.73 9.94 -40.12 -0.40 -2.13 16 7 C -0.11 -2.15 9.27 -39.59 -0.37 -2.52 16 8 C 0.02 0.53 5.08 -104.43 -0.53 0.00 16 9 C 0.22 5.31 2.39 -70.02 -0.17 5.14 16 10 H 0.05 1.39 6.98 -51.93 -0.36 1.03 16 11 N -0.85 -18.58 8.52 -6.66 -0.06 -18.64 16 12 C -0.62 -16.38 8.52 -34.44 -0.29 -16.67 16 13 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 14 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 15 N -0.90 -25.18 13.63 55.43 0.76 -24.43 16 16 Si 1.06 24.24 29.91 -169.99 -5.08 19.16 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 C -0.17 -3.73 6.34 -38.54 -0.24 -3.98 16 21 S 0.13 2.59 22.83 -107.50 -2.45 0.13 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.13 2.37 6.42 -52.49 -0.34 2.04 16 28 H 0.32 6.69 7.63 -39.29 -0.30 6.39 16 29 H 0.33 7.50 8.44 -39.29 -0.33 7.17 16 30 H 0.27 7.51 6.21 -40.82 -0.25 7.26 16 LS Contribution 272.57 15.07 4.11 4.11 Total: -1.00 -29.65 272.57 -8.55 -38.20 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -2.90 Total: 11.01 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.81 Total: -20.23 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.60 Total: -52.37 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.16 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.45 Total: 0.13 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.65 -8.55 -38.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.911 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds