Wall clock time and date at job start Mon Mar 30 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46640 * 2 1 4 4 C 1.50700 * 109.46620 * 240.00825 * 2 1 3 5 5 H 1.08001 * 119.99927 * 245.37459 * 4 2 1 6 6 C 1.37878 * 120.00445 * 65.37204 * 4 2 1 7 7 N 1.31510 * 120.00051 * 185.16838 * 6 4 2 8 8 Si 1.86794 * 119.99855 * 5.16303 * 6 4 2 9 9 H 1.48497 * 109.47577 * 270.00313 * 8 6 4 10 10 H 1.48509 * 109.47253 * 30.00499 * 8 6 4 11 11 H 1.48504 * 109.47299 * 150.00160 * 8 6 4 12 12 C 1.50692 * 109.47549 * 120.00826 * 2 1 3 13 13 C 1.31763 * 124.29310 * 239.72783 * 12 2 1 14 14 C 1.45479 * 114.89903 * 179.80364 * 13 12 2 15 15 C 1.41179 * 129.27875 * 180.18964 * 14 13 12 16 16 C 1.36023 * 120.54014 * 180.26566 * 15 14 13 17 17 C 1.39298 * 120.53587 * 0.04943 * 16 15 14 18 18 O 1.35946 * 119.96435 * 179.97438 * 17 16 15 19 19 C 1.37913 * 120.06475 * 359.94952 * 17 16 15 20 20 C 1.39729 * 111.80292 * 0.46142 * 14 13 12 21 21 S 1.75296 * 124.29536 * 60.01873 * 12 2 1 22 22 H 1.09005 * 109.46875 * 174.96140 * 1 2 3 23 23 H 1.09004 * 109.46594 * 294.95813 * 1 2 3 24 24 H 1.08996 * 109.47675 * 54.95627 * 1 2 3 25 25 H 0.97000 * 120.00139 * 354.99542 * 7 6 4 26 26 H 1.07997 * 122.54859 * 359.97422 * 13 12 2 27 27 H 1.08004 * 119.72597 * 0.28959 * 15 14 13 28 28 H 1.08005 * 119.73499 * 180.02562 * 16 15 14 29 29 H 0.96697 * 113.99869 * 269.97165 * 18 17 16 30 30 H 1.08006 * 119.93008 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5797 -1.6362 -1.1340 6 6 1.7929 -0.1780 -2.4798 7 7 2.1410 -0.8469 -3.5572 8 14 0.9740 1.4930 -2.6418 9 1 -0.4992 1.3182 -2.7071 10 1 1.3214 2.3306 -1.4657 11 1 1.4489 2.1590 -3.8813 12 6 2.0324 -0.7105 1.2303 13 6 2.7973 -0.1549 2.1481 14 6 3.1593 -1.0279 3.2541 15 6 3.9519 -0.7508 4.3891 16 6 4.1831 -1.7129 5.3224 17 6 3.6424 -2.9880 5.1733 18 8 3.8813 -3.9410 6.1129 19 6 2.8645 -3.2844 4.0737 20 6 2.6165 -2.3068 3.1050 21 16 1.6795 -2.3832 1.6182 22 1 -0.3633 -1.0238 -0.0903 23 1 -0.3633 0.4337 0.9318 24 1 -0.3634 0.5900 -0.8413 25 1 2.6308 -1.6800 -3.4738 26 1 3.1280 0.8713 2.0855 27 1 4.3779 0.2334 4.5174 28 1 4.7911 -1.4866 6.1859 29 1 4.6718 -4.4713 5.9431 30 1 2.4460 -4.2736 3.9605 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261070024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:42 Heat of formation + Delta-G solvation = -32.694427 kcal Electronic energy + Delta-G solvation = -15012.048974 eV Core-core repulsion = 12476.433821 eV Total energy + Delta-G solvation = -2535.615153 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82751 -38.60268 -37.07022 -34.78778 -33.01006 -31.94279 -28.96798 -26.78641 -24.67063 -24.14684 -22.27345 -21.02873 -19.69344 -19.61697 -17.72581 -16.92166 -16.74450 -16.05384 -15.83497 -15.38502 -14.78539 -14.71968 -14.43099 -14.21286 -13.79618 -13.51105 -13.19545 -12.89236 -12.59864 -12.33396 -12.09499 -11.68574 -11.61818 -11.53024 -11.28286 -10.89324 -10.66643 -10.58437 -9.27434 -8.75300 -8.66745 -6.42225 -0.24405 0.20731 0.57702 1.16225 1.33240 1.44678 1.54092 1.70372 2.47641 2.61315 3.08778 3.25893 3.63396 3.84069 4.13676 4.23566 4.38368 4.52973 4.61525 4.72250 4.79845 4.86455 4.90246 5.07228 5.14199 5.29009 5.37318 5.45028 5.59204 5.73364 5.92245 6.00630 6.51822 6.82554 7.37328 8.63882 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.046392 B = 0.005679 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.404121 B = 4929.541658 C = 5118.967139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 H 0.055 0.945 4 C -0.586 4.586 5 H 0.021 0.979 6 C -0.022 4.022 7 N -0.944 5.944 8 Si 1.091 2.909 9 H -0.263 1.263 10 H -0.244 1.244 11 H -0.293 1.293 12 C -0.113 4.113 13 C -0.156 4.156 14 C -0.092 4.092 15 C -0.065 4.065 16 C -0.139 4.139 17 C 0.118 3.882 18 O -0.501 6.501 19 C -0.125 4.125 20 C -0.151 4.151 21 S 0.061 5.939 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.250 0.750 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.412 0.588 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 0.067 18.472 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 H 0.073 0.927 4 C -0.624 4.624 5 H 0.039 0.961 6 C -0.219 4.219 7 N -0.580 5.580 8 Si 0.912 3.088 9 H -0.188 1.188 10 H -0.168 1.168 11 H -0.220 1.220 12 C -0.229 4.229 13 C -0.184 4.184 14 C -0.100 4.100 15 C -0.084 4.084 16 C -0.159 4.159 17 C 0.071 3.929 18 O -0.314 6.314 19 C -0.148 4.148 20 C -0.267 4.267 21 S 0.325 5.675 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.175 0.825 27 H 0.175 0.825 28 H 0.181 0.819 29 H 0.272 0.728 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.968 0.256 16.857 16.886 hybrid contribution 1.909 -0.951 0.784 2.272 sum 2.876 -0.695 17.641 17.887 Atomic orbital electron populations 1.22074 0.96274 1.00953 1.00664 1.18024 0.93589 0.95762 0.88556 0.92699 1.22192 1.38735 1.08886 0.92620 0.96083 1.27251 0.96595 1.06498 0.91562 1.70942 1.38696 1.16900 1.31502 0.83460 0.76684 0.71820 0.76798 1.18826 1.16838 1.22036 1.24216 1.02151 0.96361 1.00152 1.21056 1.01860 1.01676 0.93844 1.19568 1.01110 0.92203 0.97135 1.20889 0.95737 1.00919 0.90875 1.21208 1.01646 0.92404 1.00692 1.18189 0.97099 0.89769 0.87837 1.84774 1.51624 1.48884 1.46137 1.20795 1.02254 0.98803 0.92990 1.22833 1.05273 0.98433 1.00148 1.84226 1.54438 1.12255 1.16571 0.94027 0.91892 0.93122 0.94053 0.82458 0.82505 0.81855 0.72817 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 8.65 71.98 0.62 -5.26 16 2 C 0.06 2.82 2.21 -12.29 -0.03 2.79 16 3 H 0.06 2.44 6.56 -2.39 -0.02 2.43 16 4 C -0.59 -32.98 8.78 25.60 0.22 -32.75 16 5 H 0.02 1.32 7.94 -2.91 -0.02 1.29 16 6 C -0.02 -1.27 5.43 84.66 0.46 -0.81 16 7 N -0.94 -59.37 13.70 21.45 0.29 -59.08 16 8 Si 1.09 49.08 25.29 68.60 1.73 50.81 16 9 H -0.26 -10.95 6.81 99.48 0.68 -10.27 16 10 H -0.24 -9.59 6.36 99.48 0.63 -8.96 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 12 C -0.11 -4.76 4.95 24.94 0.12 -4.64 16 13 C -0.16 -5.66 10.16 23.40 0.24 -5.42 16 14 C -0.09 -2.99 6.04 -20.33 -0.12 -3.11 16 15 C -0.06 -1.57 10.04 22.48 0.23 -1.34 16 16 C -0.14 -2.91 9.89 22.01 0.22 -2.69 16 17 C 0.12 2.78 6.69 22.45 0.15 2.93 16 18 O -0.50 -9.25 13.50 -92.94 -1.25 -10.50 16 19 C -0.13 -3.57 10.01 22.58 0.23 -3.34 16 20 C -0.15 -5.20 6.48 23.02 0.15 -5.05 16 21 S 0.06 2.42 22.86 -56.49 -1.29 1.13 16 22 H 0.04 1.78 8.11 -2.38 -0.02 1.76 16 23 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.05 2.05 4.40 -2.39 -0.01 2.04 16 25 H 0.25 16.10 8.72 -92.71 -0.81 15.29 16 26 H 0.16 4.95 8.06 -2.91 -0.02 4.92 16 27 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.41 3.42 9.06 -74.06 -0.67 2.75 16 30 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -69.32 270.12 2.33 -67.00 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.36 Total: 9.34 kcal Atomic # 6 Polarization: -61.18 SS G_CDS: 2.49 Total: -58.70 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.29 Total: -59.08 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.25 Total: -10.50 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.73 Total: 50.81 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.29 Total: 1.13 kcal Total: -69.32 2.33 -67.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.304 kcal (2) G-P(sol) polarization free energy of solvation -69.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds