Wall clock time and date at job start Mon Mar 30 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 C 1.50706 * 109.46708 * 239.99945 * 2 1 3 13 13 C 1.31764 * 124.28887 * 119.99895 * 12 2 1 14 14 C 1.45470 * 114.89624 * 179.97438 * 13 12 2 15 15 C 1.41183 * 129.27817 * 179.97438 * 14 13 12 16 16 C 1.36028 * 120.53701 * 180.02562 * 15 14 13 17 17 C 1.39283 * 120.53860 * 0.02562 * 16 15 14 18 18 O 1.35953 * 119.97099 * 180.02562 * 17 16 15 19 19 C 1.37918 * 120.06735 * 0.02562 * 17 16 15 20 20 C 1.39726 * 111.80611 * 0.02562 * 14 13 12 21 21 S 1.75284 * 124.29467 * 299.70122 * 12 2 1 22 22 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 23 23 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 24 24 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 25 25 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 26 26 H 1.07997 * 122.55404 * 359.96079 * 13 12 2 27 27 H 1.08005 * 119.72951 * 0.02562 * 15 14 13 28 28 H 1.08003 * 119.72942 * 180.02562 * 16 15 14 29 29 H 0.96703 * 114.00024 * 269.98801 * 18 17 16 30 30 H 1.08001 * 119.93604 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 6 2.0322 -0.7105 -1.2305 13 6 2.7928 -0.1532 -2.1510 14 6 3.1597 -1.0278 -3.2540 15 6 3.9522 -0.7506 -4.3890 16 6 4.1836 -1.7128 -5.3222 17 6 3.6420 -2.9874 -5.1738 18 8 3.8811 -3.9406 -6.1133 19 6 2.8634 -3.2837 -4.0746 20 6 2.6164 -2.3065 -3.1053 21 16 1.6849 -2.3850 -1.6151 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7083 1.1608 3.4844 26 1 3.1188 0.8746 -2.0912 27 1 4.3783 0.2336 -4.5173 28 1 4.7922 -1.4866 -6.1853 29 1 3.2291 -3.9616 -6.8271 30 1 2.4442 -4.2726 -3.9619 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:45 Heat of formation + Delta-G solvation = -13.062907 kcal Electronic energy + Delta-G solvation = -14963.560358 eV Core-core repulsion = 12428.796492 eV Total energy + Delta-G solvation = -2534.763866 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.61896 -37.32002 -35.35445 -33.09360 -30.94667 -30.46238 -27.34312 -25.24166 -23.30286 -22.75027 -20.82910 -19.53153 -18.48944 -16.84989 -16.05817 -15.59121 -15.31403 -14.85536 -14.50292 -13.57502 -13.47637 -13.12095 -12.91407 -12.37124 -11.97331 -11.62797 -11.52334 -11.16780 -10.99302 -10.67149 -10.56190 -10.26367 -10.14736 -9.96668 -9.75808 -9.37688 -9.04065 -8.47909 -7.79515 -7.23685 -6.11805 -4.19773 1.07829 1.41594 2.06146 2.68990 2.79713 3.25902 3.32665 3.37281 3.84291 4.29405 4.36061 4.92566 5.07466 5.20110 5.34260 5.52239 5.75660 5.96848 6.14728 6.20010 6.40800 6.49578 6.66819 6.73785 6.83648 6.89389 7.04196 7.11888 7.54419 7.67007 7.74121 7.94887 8.21665 8.82057 9.46012 10.93820 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.005561 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.599952 B = 5033.535816 C = 5203.379588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.049 0.951 4 C -0.515 4.515 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C -0.073 4.073 13 C -0.179 4.179 14 C -0.061 4.061 15 C -0.074 4.074 16 C -0.146 4.146 17 C 0.094 3.906 18 O -0.499 6.499 19 C -0.104 4.104 20 C -0.150 4.150 21 S 0.101 5.899 22 H 0.091 0.909 23 H 0.013 0.987 24 H 0.030 0.970 25 H 0.263 0.737 26 H 0.139 0.861 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.385 0.615 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -4.186 -13.375 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 H 0.067 0.933 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C -0.189 4.189 13 C -0.207 4.207 14 C -0.071 4.071 15 C -0.093 4.093 16 C -0.167 4.167 17 C 0.048 3.952 18 O -0.308 6.308 19 C -0.127 4.127 20 C -0.266 4.266 21 S 0.366 5.634 22 H 0.109 0.891 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.157 0.843 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.240 0.760 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.635 -5.284 -12.082 13.288 hybrid contribution 0.794 0.751 -0.128 1.100 sum 2.429 -4.534 -12.210 13.249 Atomic orbital electron populations 1.21838 0.96988 0.99651 1.00833 1.17699 0.93125 0.95262 0.86500 0.93276 1.21093 1.31883 1.12744 0.89644 0.92100 1.24930 0.94772 0.94924 0.99016 1.69870 1.36234 1.22758 1.23737 0.86529 0.78660 0.80221 0.82322 1.20520 1.21074 1.19691 1.24899 0.98311 0.95465 1.00188 1.20752 1.04615 1.00816 0.94482 1.19420 0.98993 0.92661 0.95984 1.20538 0.97227 0.99162 0.92394 1.20787 1.02698 0.92503 1.00756 1.18070 0.98383 0.88047 0.90730 1.84851 1.53836 1.54930 1.37182 1.20585 0.99591 0.98429 0.94067 1.22795 1.05479 0.97301 1.01018 1.84221 1.53240 1.12189 1.13790 0.89087 0.96795 0.95057 0.92720 0.84291 0.85595 0.85575 0.76036 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.88 37.16 0.33 -2.84 16 2 C 0.09 2.30 2.64 -92.92 -0.24 2.05 16 3 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 4 C -0.52 -13.74 8.42 -34.44 -0.29 -14.03 16 5 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C -0.07 -1.56 4.95 -36.19 -0.18 -1.74 16 13 C -0.18 -3.47 10.16 -38.59 -0.39 -3.86 16 14 C -0.06 -1.08 6.04 -105.34 -0.64 -1.72 16 15 C -0.07 -1.07 10.04 -39.26 -0.39 -1.46 16 16 C -0.15 -1.93 9.89 -39.99 -0.40 -2.33 16 17 C 0.09 1.31 6.69 -39.31 -0.26 1.05 16 18 O -0.50 -5.80 13.50 -19.59 -0.26 -6.06 16 19 C -0.10 -1.59 10.01 -39.10 -0.39 -1.98 16 20 C -0.15 -2.67 6.48 -38.43 -0.25 -2.92 16 21 S 0.10 1.96 22.75 -107.50 -2.45 -0.49 16 22 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.03 0.71 7.94 -51.93 -0.41 0.29 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 27 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 28 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 29 H 0.38 2.48 9.06 45.56 0.41 2.90 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -29.04 275.46 -8.54 -37.58 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -2.39 Total: 0.88 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -3.20 Total: -28.13 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.63 Total: -23.82 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.26 Total: -6.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.45 Total: -0.49 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.04 -8.54 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.515 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds