Wall clock time and date at job start Mon Mar 30 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 C 1.50706 * 109.46708 * 239.99945 * 2 1 3 13 13 C 1.31764 * 124.28887 * 119.99895 * 12 2 1 14 14 C 1.45470 * 114.89624 * 179.97438 * 13 12 2 15 15 C 1.41183 * 129.27817 * 179.97438 * 14 13 12 16 16 C 1.36028 * 120.53701 * 180.02562 * 15 14 13 17 17 C 1.39283 * 120.53860 * 0.02562 * 16 15 14 18 18 O 1.35953 * 119.97099 * 180.02562 * 17 16 15 19 19 C 1.37918 * 120.06735 * 0.02562 * 17 16 15 20 20 C 1.39726 * 111.80611 * 0.02562 * 14 13 12 21 21 S 1.75284 * 124.29467 * 299.70122 * 12 2 1 22 22 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 23 23 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 24 24 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 25 25 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 26 26 H 1.07997 * 122.55404 * 359.96079 * 13 12 2 27 27 H 1.08005 * 119.72951 * 0.02562 * 15 14 13 28 28 H 1.08003 * 119.72942 * 180.02562 * 16 15 14 29 29 H 0.96703 * 114.00024 * 269.98801 * 18 17 16 30 30 H 1.08001 * 119.93604 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 6 2.0322 -0.7105 -1.2305 13 6 2.7928 -0.1532 -2.1510 14 6 3.1597 -1.0278 -3.2540 15 6 3.9522 -0.7506 -4.3890 16 6 4.1836 -1.7128 -5.3222 17 6 3.6420 -2.9874 -5.1738 18 8 3.8811 -3.9406 -6.1133 19 6 2.8634 -3.2837 -4.0746 20 6 2.6164 -2.3065 -3.1053 21 16 1.6849 -2.3850 -1.6151 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7083 1.1608 3.4844 26 1 3.1188 0.8746 -2.0912 27 1 4.3783 0.2336 -4.5173 28 1 4.7922 -1.4866 -6.1853 29 1 3.2291 -3.9616 -6.8271 30 1 2.4442 -4.2726 -3.9619 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261070025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:44 Heat of formation + Delta-G solvation = -30.102178 kcal Electronic energy + Delta-G solvation = -14964.299237 eV Core-core repulsion = 12428.796492 eV Total energy + Delta-G solvation = -2535.502745 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77714 -38.52452 -36.94650 -34.73520 -32.50772 -31.84101 -28.74798 -27.27052 -24.61118 -24.14147 -22.31957 -21.03180 -19.58970 -18.61490 -17.59561 -16.89117 -16.62538 -16.40059 -15.87758 -15.01448 -14.87495 -14.56189 -14.48278 -13.82187 -13.51069 -13.20952 -12.99783 -12.87731 -12.75847 -12.33612 -12.28028 -11.94405 -11.64649 -11.53960 -11.25178 -11.01221 -10.56438 -10.51167 -9.15603 -8.64052 -8.15115 -6.29831 -0.18561 0.25302 0.65244 1.22801 1.36938 1.40000 1.42928 1.52239 2.40834 2.66502 3.13127 3.29662 3.72153 3.90827 4.18040 4.35507 4.48891 4.72438 4.76014 4.85573 4.91798 4.98829 5.08923 5.22896 5.34729 5.43398 5.47004 5.59815 5.77180 5.79156 5.96178 6.23898 6.76363 6.87548 7.38480 8.89245 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.005561 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.599952 B = 5033.535816 C = 5203.379588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.097 3.903 3 H 0.023 0.977 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.271 1.271 12 C -0.114 4.114 13 C -0.164 4.164 14 C -0.090 4.090 15 C -0.068 4.068 16 C -0.139 4.139 17 C 0.117 3.883 18 O -0.501 6.501 19 C -0.122 4.122 20 C -0.153 4.153 21 S 0.076 5.924 22 H 0.066 0.934 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.264 0.736 26 H 0.147 0.853 27 H 0.153 0.847 28 H 0.162 0.838 29 H 0.412 0.588 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -5.054 -15.649 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 H 0.041 0.959 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.196 1.196 12 C -0.229 4.229 13 C -0.192 4.192 14 C -0.098 4.098 15 C -0.088 4.088 16 C -0.160 4.160 17 C 0.069 3.931 18 O -0.314 6.314 19 C -0.145 4.145 20 C -0.269 4.269 21 S 0.341 5.659 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.165 0.835 27 H 0.171 0.829 28 H 0.180 0.820 29 H 0.272 0.728 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.019 -6.154 -14.382 15.932 hybrid contribution 0.453 0.958 0.318 1.106 sum 3.472 -5.196 -14.064 15.390 Atomic orbital electron populations 1.21663 0.96807 0.99351 1.00342 1.17455 0.93357 0.94006 0.87526 0.95882 1.21326 1.31754 1.12585 0.91022 0.93094 1.25644 0.95010 0.95612 1.01602 1.69980 1.37050 1.23782 1.24309 0.85630 0.78275 0.79110 0.79168 1.20052 1.20426 1.19560 1.24509 1.01265 0.96759 1.00405 1.20998 1.02616 1.01312 0.94305 1.19531 1.00988 0.92317 0.96975 1.20863 0.95957 1.00883 0.91062 1.21179 1.01962 0.91617 1.01193 1.18171 0.96151 0.88454 0.90289 1.84786 1.54905 1.54163 1.37569 1.20794 1.00764 0.98630 0.94314 1.22853 1.05374 0.98215 1.00426 1.84045 1.54687 1.11258 1.15952 0.91476 0.95152 0.95151 0.92628 0.83527 0.82930 0.82010 0.72828 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.88 71.98 0.64 -5.38 16 2 C 0.10 4.90 2.64 -12.28 -0.03 4.87 16 3 H 0.02 1.26 8.06 -2.39 -0.02 1.24 16 4 C -0.53 -29.10 8.42 25.60 0.22 -28.89 16 5 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.56 11.32 21.45 0.24 -51.32 16 8 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C -0.11 -5.02 4.95 24.95 0.12 -4.90 16 13 C -0.16 -6.38 10.16 23.39 0.24 -6.14 16 14 C -0.09 -3.04 6.04 -20.33 -0.12 -3.16 16 15 C -0.07 -1.74 10.04 22.48 0.23 -1.52 16 16 C -0.14 -3.02 9.89 22.01 0.22 -2.80 16 17 C 0.12 2.76 6.69 22.45 0.15 2.91 16 18 O -0.50 -9.29 13.50 -93.02 -1.26 -10.54 16 19 C -0.12 -3.45 10.01 22.58 0.23 -3.23 16 20 C -0.15 -5.30 6.48 23.02 0.15 -5.15 16 21 S 0.08 3.02 22.75 -56.49 -1.28 1.74 16 22 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.03 1.42 7.94 -2.38 -0.02 1.40 16 25 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 26 H 0.15 5.25 8.06 -2.91 -0.02 5.22 16 27 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.41 3.25 9.06 -74.06 -0.67 2.58 16 30 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -63.42 275.46 2.70 -60.72 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.49 Total: 5.67 kcal Atomic # 6 Polarization: -54.27 SS G_CDS: 2.48 Total: -51.79 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.24 Total: -51.32 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.26 Total: -10.54 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.28 Total: 1.74 kcal Total: -63.42 2.70 -60.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.622 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds