Wall clock time and date at job start Mon Mar 30 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47192 * 54.99616 * 10 9 7 12 12 N 1.46896 * 109.46919 * 294.99564 * 10 9 7 13 13 C 1.50695 * 109.46942 * 174.99721 * 10 9 7 14 14 C 1.37695 * 120.02251 * 99.99906 * 13 10 9 15 15 C 1.38755 * 120.06705 * 179.97438 * 14 13 10 16 16 C 1.36217 * 120.77581 * 359.97438 * 15 14 13 17 17 C 1.40920 * 120.42698 * 0.02562 * 16 15 14 18 18 N 1.34673 * 129.69690 * 180.02562 * 17 16 15 19 19 C 1.27934 * 117.84424 * 179.20164 * 18 17 16 20 20 S 1.70648 * 111.52945 * 0.72551 * 19 18 17 21 21 C 1.39294 * 120.02421 * 279.72236 * 13 10 9 22 22 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.00899 * 110.99894 * 176.04490 * 12 10 9 26 26 H 1.00900 * 111.00679 * 300.00301 * 12 10 9 27 27 H 1.08001 * 119.96984 * 359.97438 * 14 13 10 28 28 H 1.07999 * 119.60693 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.78290 * 180.02562 * 16 15 14 30 30 H 1.07997 * 124.23416 * 180.20002 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5873 -3.1753 -0.8410 12 7 3.6326 -3.2934 1.2559 13 6 5.5235 -2.6381 -0.1223 14 6 6.3065 -2.8119 0.9969 15 6 7.6895 -2.8142 0.8844 16 6 8.2905 -2.6462 -0.3264 17 6 7.5151 -2.4661 -1.4892 18 7 7.9069 -2.2863 -2.7651 19 6 6.9984 -2.1596 -3.6570 20 16 5.4361 -2.2345 -2.9745 21 6 6.1206 -2.4696 -1.3695 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6803 -0.8889 24 1 3.8746 -0.6798 0.8911 25 1 3.9016 -4.2659 1.2535 26 1 4.0231 -2.8122 2.0523 27 1 5.8437 -2.9467 1.9635 28 1 8.2964 -2.9507 1.7672 29 1 9.3682 -2.6511 -0.3956 30 1 7.1956 -2.0144 -4.7088 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074246.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:23 Heat of formation + Delta-G solvation = 57.208235 kcal Electronic energy + Delta-G solvation = -15395.523575 eV Core-core repulsion = 12896.099645 eV Total energy + Delta-G solvation = -2499.423930 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35864 -37.58675 -35.10926 -32.43713 -30.51889 -29.61774 -28.84719 -24.88579 -24.65951 -22.35008 -21.35203 -19.84038 -18.11347 -16.69936 -16.30977 -16.09163 -15.52293 -14.95999 -14.62654 -14.26278 -13.76041 -13.55716 -13.24196 -12.54780 -12.29931 -11.99131 -11.83578 -11.41742 -11.18750 -10.86194 -10.48380 -10.33226 -9.75355 -9.65658 -9.55275 -9.16763 -8.65878 -8.49231 -8.14922 -7.85584 -5.97261 -3.92931 0.49559 1.24175 1.42316 1.90835 2.42739 3.31930 3.39845 3.42793 3.74988 4.04728 4.48809 4.69994 4.91255 5.06833 5.12023 5.26197 5.35943 5.45052 5.57990 5.89009 5.96526 6.19382 6.23642 6.36079 6.57430 6.76851 7.00211 7.23028 7.61688 7.69110 7.84776 7.99332 8.62893 9.14468 9.64634 11.16268 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.007921 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.298038 B = 3534.192565 C = 4013.262960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.869 3.131 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.002 3.998 10 C 0.139 3.861 11 H 0.087 0.913 12 N -0.816 5.816 13 C -0.052 4.052 14 C -0.120 4.120 15 C -0.099 4.099 16 C -0.081 4.081 17 C 0.076 3.924 18 N -0.473 5.473 19 C 0.047 3.953 20 S 0.132 5.868 21 C -0.175 4.175 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.017 0.983 25 H 0.328 0.672 26 H 0.336 0.664 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.349 -5.877 -2.482 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.696 3.304 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.534 4.534 8 H 0.100 0.900 9 C -0.036 4.036 10 C 0.026 3.974 11 H 0.105 0.895 12 N -0.344 5.344 13 C -0.058 4.058 14 C -0.142 4.142 15 C -0.120 4.120 16 C -0.102 4.102 17 C -0.044 4.044 18 N -0.186 5.186 19 C -0.257 4.257 20 S 0.387 5.613 21 C -0.295 4.295 22 H 0.071 0.929 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.139 0.861 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 13.999 -5.458 -3.378 15.401 hybrid contribution 2.098 0.816 0.717 2.363 sum 16.097 -4.642 -2.661 16.963 Atomic orbital electron populations 1.69897 1.06086 1.26541 1.51760 1.24963 0.94662 0.98633 0.95166 0.86957 0.80388 0.84506 0.78502 1.20330 1.21365 1.19342 1.20971 0.88404 0.94683 1.49309 0.90025 1.19603 0.98209 0.89265 0.96475 1.20668 0.84175 0.99281 0.93250 0.89535 1.58704 1.67188 1.05055 1.03491 1.20814 0.99730 0.95347 0.89927 1.20988 0.93500 1.01643 0.98077 1.20651 0.94774 0.99515 0.97084 1.20236 0.99380 1.01018 0.89595 1.19268 0.90134 1.03793 0.91245 1.66262 1.36628 1.15781 0.99913 1.28148 0.92747 1.01173 1.03661 1.84484 1.08892 1.70586 0.97337 1.23720 0.96675 1.10335 0.98730 0.92889 0.96676 0.96488 0.86060 0.84944 0.85056 0.85102 0.85310 0.78292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.50 -13.93 9.39 -34.44 -0.32 -14.25 16 8 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 9 C 0.00 0.05 3.67 -27.88 -0.10 -0.05 16 10 C 0.14 2.67 2.76 -68.87 -0.19 2.48 16 11 H 0.09 1.75 8.06 -51.93 -0.42 1.33 16 12 N -0.82 -14.21 8.42 -5.66 -0.05 -14.26 16 13 C -0.05 -0.87 5.09 -104.43 -0.53 -1.40 16 14 C -0.12 -1.68 9.25 -39.59 -0.37 -2.05 16 15 C -0.10 -1.23 9.94 -40.12 -0.40 -1.63 16 16 C -0.08 -1.11 10.05 -39.29 -0.39 -1.50 16 17 C 0.08 1.22 7.00 -84.96 -0.59 0.63 16 18 N -0.47 -7.29 10.57 -12.96 -0.14 -7.43 16 19 C 0.05 0.61 12.10 51.14 0.62 1.23 16 20 S 0.13 2.00 22.88 -107.50 -2.46 -0.46 16 21 C -0.18 -2.96 6.35 -38.55 -0.24 -3.20 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 25 H 0.33 4.72 9.06 -39.29 -0.36 4.37 16 26 H 0.34 5.36 7.29 -39.29 -0.29 5.07 16 27 H 0.13 1.58 6.23 -52.49 -0.33 1.25 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -32.82 271.01 -8.09 -40.91 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.01 Total: 5.01 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.63 Total: -17.92 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.59 Total: -48.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.46 Total: -0.46 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.82 -8.09 -40.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074246.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.116 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds