Wall clock time and date at job start Mon Mar 30 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47192 * 54.99616 * 10 9 7 12 12 N 1.46896 * 109.46919 * 294.99564 * 10 9 7 13 13 C 1.50695 * 109.46942 * 174.99721 * 10 9 7 14 14 C 1.37695 * 120.02251 * 99.99906 * 13 10 9 15 15 C 1.38755 * 120.06705 * 179.97438 * 14 13 10 16 16 C 1.36217 * 120.77581 * 359.97438 * 15 14 13 17 17 C 1.40920 * 120.42698 * 0.02562 * 16 15 14 18 18 N 1.34673 * 129.69690 * 180.02562 * 17 16 15 19 19 C 1.27934 * 117.84424 * 179.20164 * 18 17 16 20 20 S 1.70648 * 111.52945 * 0.72551 * 19 18 17 21 21 C 1.39294 * 120.02421 * 279.72236 * 13 10 9 22 22 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.00899 * 110.99894 * 176.04490 * 12 10 9 26 26 H 1.00900 * 111.00679 * 300.00301 * 12 10 9 27 27 H 1.08001 * 119.96984 * 359.97438 * 14 13 10 28 28 H 1.07999 * 119.60693 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.78290 * 180.02562 * 16 15 14 30 30 H 1.07997 * 124.23416 * 180.20002 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5873 -3.1753 -0.8410 12 7 3.6326 -3.2934 1.2559 13 6 5.5235 -2.6381 -0.1223 14 6 6.3065 -2.8119 0.9969 15 6 7.6895 -2.8142 0.8844 16 6 8.2905 -2.6462 -0.3264 17 6 7.5151 -2.4661 -1.4892 18 7 7.9069 -2.2863 -2.7651 19 6 6.9984 -2.1596 -3.6570 20 16 5.4361 -2.2345 -2.9745 21 6 6.1206 -2.4696 -1.3695 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6803 -0.8889 24 1 3.8746 -0.6798 0.8911 25 1 3.9016 -4.2659 1.2535 26 1 4.0231 -2.8122 2.0523 27 1 5.8437 -2.9467 1.9635 28 1 8.2964 -2.9507 1.7672 29 1 9.3682 -2.6511 -0.3956 30 1 7.1956 -2.0144 -4.7088 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074246.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:23 Heat of formation + Delta-G solvation = 33.650737 kcal Electronic energy + Delta-G solvation = -15396.545105 eV Core-core repulsion = 12896.099645 eV Total energy + Delta-G solvation = -2500.445460 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47400 -38.83288 -36.47934 -34.53172 -31.69456 -31.06541 -30.40938 -26.33258 -25.95280 -23.75495 -22.67211 -21.28826 -19.43122 -18.64548 -17.47406 -17.25533 -16.91089 -16.21476 -16.10790 -15.74027 -15.17609 -14.94488 -14.56066 -14.45026 -13.52911 -13.42995 -13.26447 -12.87714 -12.77480 -12.35140 -12.16714 -11.86613 -11.66032 -11.33288 -10.94472 -10.73772 -10.70713 -9.75521 -9.52177 -9.03177 -8.22143 -6.22253 -0.57623 0.13146 0.31356 0.80418 1.32895 1.33304 1.34624 1.44787 2.36883 2.65425 3.06442 3.11255 3.53144 3.75424 3.95131 4.06088 4.23079 4.30645 4.39526 4.54191 4.73102 4.87888 5.08471 5.12986 5.19219 5.32816 5.48559 5.66083 5.74594 6.30399 6.44711 6.52104 6.75776 6.86052 7.38782 8.94873 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.007921 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.298038 B = 3534.192565 C = 4013.262960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.495 4.495 8 H 0.041 0.959 9 C 0.009 3.991 10 C 0.152 3.848 11 H 0.065 0.935 12 N -0.829 5.829 13 C -0.076 4.076 14 C -0.113 4.113 15 C -0.089 4.089 16 C -0.082 4.082 17 C 0.056 3.944 18 N -0.490 5.490 19 C 0.070 3.930 20 S 0.092 5.908 21 C -0.197 4.197 22 H 0.263 0.737 23 H 0.012 0.988 24 H 0.016 0.984 25 H 0.345 0.655 26 H 0.346 0.654 27 H 0.151 0.849 28 H 0.174 0.826 29 H 0.153 0.847 30 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.393 -5.488 -1.919 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.190 4.190 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.533 4.533 8 H 0.059 0.941 9 C -0.028 4.028 10 C 0.040 3.960 11 H 0.083 0.917 12 N -0.360 5.360 13 C -0.083 4.083 14 C -0.135 4.135 15 C -0.109 4.109 16 C -0.102 4.102 17 C -0.064 4.064 18 N -0.203 5.203 19 C -0.235 4.235 20 S 0.347 5.653 21 C -0.317 4.317 22 H 0.072 0.928 23 H 0.030 0.970 24 H 0.035 0.965 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.169 0.831 28 H 0.191 0.809 29 H 0.171 0.829 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 17.070 -5.093 -2.800 18.033 hybrid contribution 1.174 0.586 0.532 1.416 sum 18.244 -4.507 -2.268 18.929 Atomic orbital electron populations 1.70052 1.07963 1.27626 1.53636 1.25832 0.95457 1.02652 0.95068 0.85885 0.79442 0.79686 0.78998 1.19477 1.20939 1.17803 1.21195 0.90938 0.93064 1.48140 0.94095 1.19441 0.94918 0.92490 0.95990 1.20160 0.86253 0.96325 0.93301 0.91715 1.58591 1.67922 1.06325 1.03189 1.20541 0.98023 0.98499 0.91204 1.21319 0.94395 0.99878 0.97891 1.21085 0.94197 0.97513 0.98147 1.20683 1.00612 0.99741 0.89211 1.19709 0.90063 1.04307 0.92276 1.66317 1.36941 1.16972 1.00088 1.28798 0.90845 0.98818 1.04997 1.84587 1.11205 1.71584 0.97949 1.23879 0.97424 1.11436 0.98931 0.92785 0.96969 0.96530 0.84080 0.83884 0.83135 0.80894 0.82925 0.74162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.40 13.96 21.44 0.30 -60.10 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.94 45.25 27.47 68.60 1.88 47.14 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 7 C -0.50 -28.60 9.39 25.60 0.24 -28.36 16 8 H 0.04 2.64 7.99 -2.91 -0.02 2.61 16 9 C 0.01 0.44 3.67 29.85 0.11 0.55 16 10 C 0.15 5.89 2.76 44.17 0.12 6.01 16 11 H 0.06 2.74 8.06 -2.39 -0.02 2.72 16 12 N -0.83 -28.57 8.42 -171.82 -1.45 -30.01 16 13 C -0.08 -2.47 5.09 -19.74 -0.10 -2.57 16 14 C -0.11 -2.86 9.25 22.27 0.21 -2.65 16 15 C -0.09 -1.83 9.94 21.92 0.22 -1.61 16 16 C -0.08 -1.95 10.05 22.46 0.23 -1.72 16 17 C 0.06 1.70 7.00 39.78 0.28 1.98 16 18 N -0.49 -14.12 10.57 -194.76 -2.06 -16.18 16 19 C 0.07 1.69 12.10 130.81 1.58 3.27 16 20 S 0.09 2.78 22.88 -56.49 -1.29 1.48 16 21 C -0.20 -6.51 6.35 22.94 0.15 -6.36 16 22 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 23 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 24 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 25 H 0.35 9.69 9.06 -89.69 -0.81 8.88 16 26 H 0.35 10.57 7.29 -89.69 -0.65 9.92 16 27 H 0.15 3.12 6.23 -2.91 -0.02 3.11 16 28 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.24 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -72.70 271.01 0.54 -72.16 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.34 Total: 16.18 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 3.49 Total: -30.67 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -3.21 Total: -106.29 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.29 Total: 1.48 kcal Total: -72.70 0.54 -72.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074246.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.814 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds