Wall clock time and date at job start Mon Mar 30 2020 05:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35654 * 117.00159 * 2 1 4 4 C 1.39604 * 120.08438 * 269.97866 * 3 2 1 5 5 S 1.76049 * 130.43149 * 0.02562 * 4 3 2 6 6 C 1.75479 * 91.52840 * 180.02562 * 5 4 3 7 7 C 1.32502 * 110.77098 * 359.97438 * 6 5 4 8 8 C 1.50706 * 122.06442 * 180.02562 * 7 6 5 9 9 C 1.39959 * 120.13983 * 180.02562 * 4 3 2 10 10 C 1.42221 * 119.06238 * 0.02562 * 9 4 3 11 11 C 1.35108 * 121.02914 * 359.68713 * 10 9 4 12 12 C 1.40946 * 120.08556 * 89.99817 * 3 2 1 13 13 C 1.40837 * 120.25505 * 359.96057 * 12 3 2 14 14 H 1.07998 * 119.99601 * 27.12430 * 13 12 3 15 15 C 1.39821 * 119.99791 * 207.12848 * 13 12 3 16 16 N 1.30968 * 119.99456 * 203.70533 * 15 13 12 17 17 Si 1.86800 * 120.00459 * 23.70143 * 15 13 12 18 18 H 1.48496 * 109.47228 * 263.24853 * 17 15 13 19 19 H 1.48505 * 109.47080 * 23.24465 * 17 15 13 20 20 H 1.48493 * 109.47173 * 143.24640 * 17 15 13 21 21 H 1.09005 * 109.47082 * 300.00466 * 1 2 3 22 22 H 1.09003 * 109.47099 * 59.99573 * 1 2 3 23 23 H 1.08996 * 109.47207 * 180.02562 * 1 2 3 24 24 H 1.08004 * 124.61582 * 180.02562 * 6 5 4 25 25 H 1.09000 * 109.47091 * 90.02540 * 8 7 6 26 26 H 1.08997 * 109.46832 * 210.02363 * 8 7 6 27 27 H 1.08999 * 109.47386 * 330.02301 * 8 7 6 28 28 H 1.07995 * 119.48524 * 180.02562 * 10 9 4 29 29 H 1.07996 * 119.77844 * 180.27660 * 11 10 9 30 30 H 0.96992 * 119.99910 * 353.17104 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 2.3630 1.8320 -1.2080 5 16 2.0964 1.3088 -2.8677 6 6 2.8415 2.7676 -3.4969 7 6 3.2422 3.5543 -2.5088 8 6 3.9171 4.8776 -2.7633 9 6 2.9989 3.0788 -1.2093 10 6 3.3137 3.6951 0.0331 11 6 3.0028 3.0987 1.2049 12 6 2.3656 1.8382 1.2196 13 6 2.0484 1.2177 2.4434 14 1 1.9780 0.1415 2.5008 15 6 1.8247 1.9949 3.5840 16 7 1.9894 1.4736 4.7741 17 14 1.2910 3.7766 3.4103 18 1 2.4784 4.6618 3.5183 19 1 0.6456 3.9733 2.0874 20 1 0.3247 4.1111 4.4871 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 2.9569 2.9939 -4.5466 25 1 3.1644 5.6635 -2.8246 26 1 4.6058 5.0969 -1.9474 27 1 4.4693 4.8293 -3.7018 28 1 3.8040 4.6573 0.0401 29 1 3.2472 3.5870 2.1367 30 1 2.1693 0.5251 4.8675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:10 Heat of formation + Delta-G solvation = -15.091756 kcal Electronic energy + Delta-G solvation = -15702.271611 eV Core-core repulsion = 13167.419767 eV Total energy + Delta-G solvation = -2534.851844 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.99714 -37.03970 -35.18552 -33.38289 -30.02074 -29.43721 -27.34818 -26.02260 -24.72768 -22.03186 -20.86480 -19.14213 -18.43136 -16.98269 -15.65756 -15.29160 -14.67450 -14.44813 -14.01355 -13.69721 -13.46346 -13.40243 -13.17330 -12.28720 -12.15235 -11.81848 -11.55336 -11.35439 -11.15238 -10.85649 -10.61770 -10.43991 -10.05023 -9.89594 -9.59770 -9.28350 -8.85407 -8.44452 -7.82548 -7.45852 -6.82375 -4.69209 1.68584 2.29051 2.50714 2.90985 2.92572 3.07286 3.27591 3.36883 3.77879 4.24575 4.75712 5.21503 5.50700 5.60580 5.83668 5.89401 5.95469 6.02297 6.10949 6.17907 6.20797 6.31059 6.51987 6.60865 6.75540 6.94756 7.19596 7.28570 7.42958 7.49831 7.58299 7.97452 8.17229 8.39475 8.78970 9.65655 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.009572 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.448062 B = 2924.455106 C = 3753.298248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C -0.026 4.026 4 C -0.065 4.065 5 S 0.020 5.980 6 C -0.271 4.271 7 C -0.043 4.043 8 C -0.094 4.094 9 C -0.203 4.203 10 C -0.038 4.038 11 C -0.207 4.207 12 C 0.098 3.902 13 C -0.469 4.469 14 H 0.090 0.910 15 C 0.040 3.960 16 N -0.786 5.786 17 Si 1.066 2.934 18 H -0.271 1.271 19 H -0.259 1.259 20 H -0.283 1.283 21 H 0.043 0.957 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.146 0.854 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 4.259 -7.327 8.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C -0.078 4.078 4 C -0.181 4.181 5 S 0.282 5.718 6 C -0.404 4.404 7 C -0.055 4.055 8 C -0.153 4.153 9 C -0.208 4.208 10 C -0.059 4.059 11 C -0.226 4.226 12 C 0.091 3.909 13 C -0.496 4.496 14 H 0.108 0.892 15 C -0.183 4.183 16 N -0.406 5.406 17 Si 0.890 3.110 18 H -0.197 1.197 19 H -0.183 1.183 20 H -0.210 1.210 21 H 0.061 0.939 22 H 0.048 0.952 23 H 0.092 0.908 24 H 0.164 0.836 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.461 4.113 -7.136 8.365 hybrid contribution 0.808 -0.250 -0.177 0.864 sum -0.653 3.863 -7.314 8.297 Atomic orbital electron populations 1.22811 0.82891 1.00927 0.99759 1.86003 1.17710 1.25789 1.94039 1.17556 1.09202 0.91761 0.89243 1.22629 1.03046 0.97274 0.95109 1.83716 1.66588 1.22919 0.98534 1.24394 1.14353 1.00295 1.01382 1.18548 0.98710 0.96504 0.91697 1.20517 0.99550 0.93760 1.01486 1.17457 1.13970 0.96599 0.92796 1.20319 0.97154 0.97514 0.90866 1.20643 1.06376 0.98602 0.97002 1.17765 0.90190 0.90667 0.92254 1.20680 1.38665 0.97104 0.93177 0.89199 1.27509 0.91211 1.08216 0.91346 1.70555 1.28013 1.16605 1.25472 0.83694 0.77933 0.71962 0.77423 1.19673 1.18345 1.20957 0.93872 0.95164 0.90814 0.83603 0.91729 0.91763 0.92273 0.87765 0.86903 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.13 101.05 1.12 1.75 16 2 O -0.32 -7.64 9.68 -18.66 -0.18 -7.82 16 3 C -0.03 -0.64 5.78 -38.05 -0.22 -0.86 16 4 C -0.07 -1.52 6.42 -38.43 -0.25 -1.76 16 5 S 0.02 0.40 23.27 -107.50 -2.50 -2.10 16 6 C -0.27 -4.93 10.81 28.82 0.31 -4.62 16 7 C -0.04 -0.81 5.82 -105.68 -0.62 -1.42 16 8 C -0.09 -1.35 9.92 36.01 0.36 -0.99 16 9 C -0.20 -4.44 5.86 -106.87 -0.63 -5.06 16 10 C -0.04 -0.81 9.58 -39.17 -0.38 -1.19 16 11 C -0.21 -4.76 7.24 -39.55 -0.29 -5.05 16 12 C 0.10 2.46 5.14 -106.75 -0.55 1.91 16 13 C -0.47 -12.01 9.02 -38.01 -0.34 -12.35 16 14 H 0.09 2.44 7.83 -52.49 -0.41 2.03 16 15 C 0.04 0.99 5.33 -17.33 -0.09 0.89 16 16 N -0.79 -19.56 13.66 55.54 0.76 -18.80 16 17 Si 1.07 22.33 25.00 -169.99 -4.25 18.08 16 18 H -0.27 -5.30 6.69 56.52 0.38 -4.93 16 19 H -0.26 -5.47 7.02 56.52 0.40 -5.08 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.15 2.21 8.06 -52.48 -0.42 1.79 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 27 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.10 1.85 7.37 -52.49 -0.39 1.46 16 29 H 0.11 2.47 4.75 -52.49 -0.25 2.22 16 30 H 0.29 7.10 8.73 -40.82 -0.36 6.75 16 LS Contribution 269.15 15.07 4.06 4.06 Total: -1.00 -26.95 269.15 -6.82 -33.76 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -3.14 Total: 1.57 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -1.56 Total: -28.75 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.76 Total: -18.80 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.18 Total: -7.82 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.25 Total: 18.08 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.50 Total: -2.10 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.95 -6.82 -33.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.672 kcal (2) G-P(sol) polarization free energy of solvation -26.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds