Wall clock time and date at job start Mon Mar 30 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35654 * 117.00159 * 2 1 4 4 C 1.39604 * 120.08438 * 269.97866 * 3 2 1 5 5 S 1.76049 * 130.43149 * 0.02562 * 4 3 2 6 6 C 1.75479 * 91.52840 * 180.02562 * 5 4 3 7 7 C 1.32502 * 110.77098 * 359.97438 * 6 5 4 8 8 C 1.50706 * 122.06442 * 180.02562 * 7 6 5 9 9 C 1.39959 * 120.13983 * 180.02562 * 4 3 2 10 10 C 1.42221 * 119.06238 * 0.02562 * 9 4 3 11 11 C 1.35108 * 121.02914 * 359.68713 * 10 9 4 12 12 C 1.40946 * 120.08556 * 89.99817 * 3 2 1 13 13 C 1.40837 * 120.25505 * 359.96057 * 12 3 2 14 14 H 1.07998 * 119.99601 * 27.12430 * 13 12 3 15 15 C 1.39821 * 119.99791 * 207.12848 * 13 12 3 16 16 N 1.30968 * 119.99456 * 203.70533 * 15 13 12 17 17 Si 1.86800 * 120.00459 * 23.70143 * 15 13 12 18 18 H 1.48496 * 109.47228 * 263.24853 * 17 15 13 19 19 H 1.48505 * 109.47080 * 23.24465 * 17 15 13 20 20 H 1.48493 * 109.47173 * 143.24640 * 17 15 13 21 21 H 1.09005 * 109.47082 * 300.00466 * 1 2 3 22 22 H 1.09003 * 109.47099 * 59.99573 * 1 2 3 23 23 H 1.08996 * 109.47207 * 180.02562 * 1 2 3 24 24 H 1.08004 * 124.61582 * 180.02562 * 6 5 4 25 25 H 1.09000 * 109.47091 * 90.02540 * 8 7 6 26 26 H 1.08997 * 109.46832 * 210.02363 * 8 7 6 27 27 H 1.08999 * 109.47386 * 330.02301 * 8 7 6 28 28 H 1.07995 * 119.48524 * 180.02562 * 10 9 4 29 29 H 1.07996 * 119.77844 * 180.27660 * 11 10 9 30 30 H 0.96992 * 119.99910 * 353.17104 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 2.3630 1.8320 -1.2080 5 16 2.0964 1.3088 -2.8677 6 6 2.8415 2.7676 -3.4969 7 6 3.2422 3.5543 -2.5088 8 6 3.9171 4.8776 -2.7633 9 6 2.9989 3.0788 -1.2093 10 6 3.3137 3.6951 0.0331 11 6 3.0028 3.0987 1.2049 12 6 2.3656 1.8382 1.2196 13 6 2.0484 1.2177 2.4434 14 1 1.9780 0.1415 2.5008 15 6 1.8247 1.9949 3.5840 16 7 1.9894 1.4736 4.7741 17 14 1.2910 3.7766 3.4103 18 1 2.4784 4.6618 3.5183 19 1 0.6456 3.9733 2.0874 20 1 0.3247 4.1111 4.4871 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 2.9569 2.9939 -4.5466 25 1 3.1644 5.6635 -2.8246 26 1 4.6058 5.0969 -1.9474 27 1 4.4693 4.8293 -3.7018 28 1 3.8040 4.6573 0.0401 29 1 3.2472 3.5870 2.1367 30 1 2.1693 0.5251 4.8675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261085011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:09 Heat of formation + Delta-G solvation = -30.265194 kcal Electronic energy + Delta-G solvation = -15702.929581 eV Core-core repulsion = 13167.419767 eV Total energy + Delta-G solvation = -2535.509813 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71695 -38.72052 -36.90093 -35.09926 -31.62443 -31.17431 -28.74733 -27.62860 -26.46675 -23.75901 -22.57072 -20.80203 -20.15393 -18.63205 -17.33674 -17.01789 -16.40655 -16.11779 -15.66893 -15.39283 -14.99840 -14.87823 -14.72969 -13.81569 -13.62903 -13.29238 -13.23879 -12.79625 -12.72610 -12.42448 -12.24722 -12.07956 -11.67903 -11.51917 -11.32631 -11.01710 -10.61349 -10.11430 -9.63297 -9.23653 -8.45956 -6.57667 0.04701 0.51274 0.86310 1.26513 1.36574 1.39935 1.63973 1.73904 2.09741 2.51108 3.00663 3.44044 4.02562 4.26124 4.38487 4.43221 4.50729 4.54627 4.65723 4.71186 4.78516 4.91554 4.96949 5.04203 5.17016 5.34492 5.35470 5.60903 5.71311 5.80207 5.88240 6.17805 6.29332 6.59071 6.99668 7.79858 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.009572 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.448062 B = 2924.455106 C = 3753.298248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.342 6.342 3 C -0.046 4.046 4 C -0.103 4.103 5 S 0.026 5.974 6 C -0.250 4.250 7 C -0.060 4.060 8 C -0.091 4.091 9 C -0.197 4.197 10 C -0.038 4.038 11 C -0.217 4.217 12 C 0.079 3.921 13 C -0.506 4.506 14 H 0.052 0.948 15 C 0.016 3.984 16 N -0.813 5.813 17 Si 1.095 2.905 18 H -0.243 1.243 19 H -0.265 1.265 20 H -0.273 1.273 21 H 0.029 0.971 22 H 0.039 0.961 23 H 0.103 0.897 24 H 0.186 0.814 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 6.944 -10.251 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.259 6.259 3 C -0.097 4.097 4 C -0.218 4.218 5 S 0.289 5.711 6 C -0.382 4.382 7 C -0.071 4.071 8 C -0.150 4.150 9 C -0.203 4.203 10 C -0.057 4.057 11 C -0.237 4.237 12 C 0.073 3.927 13 C -0.534 4.534 14 H 0.070 0.930 15 C -0.201 4.201 16 N -0.435 5.435 17 Si 0.914 3.086 18 H -0.168 1.168 19 H -0.190 1.190 20 H -0.199 1.199 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.121 0.879 24 H 0.203 0.797 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.787 6.779 -10.059 12.156 hybrid contribution 0.623 -1.132 0.313 1.330 sum -0.163 5.647 -9.746 11.265 Atomic orbital electron populations 1.22938 0.80968 1.02842 0.99467 1.85912 1.19643 1.26164 1.94178 1.17887 1.09811 0.91920 0.90123 1.22965 1.04140 0.98400 0.96334 1.83705 1.66553 1.24361 0.96526 1.24959 1.11692 0.98293 1.03282 1.18935 0.99361 0.98755 0.90054 1.20607 0.99971 0.91290 1.03101 1.18073 1.11771 0.95809 0.94673 1.20733 0.96276 0.98867 0.89863 1.20808 1.06509 0.97969 0.98392 1.18009 0.90644 0.91971 0.92115 1.20436 1.42857 0.95402 0.94755 0.92980 1.28479 0.90212 1.10854 0.90582 1.70622 1.30853 1.16138 1.25837 0.83356 0.78843 0.69178 0.77231 1.16761 1.18956 1.19908 0.95197 0.94265 0.87874 0.79697 0.90056 0.91087 0.89767 0.83625 0.86033 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.33 11.13 113.37 1.26 2.59 16 2 O -0.34 -16.96 9.68 -89.69 -0.87 -17.83 16 3 C -0.05 -2.34 5.78 23.26 0.13 -2.21 16 4 C -0.10 -4.69 6.42 23.02 0.15 -4.54 16 5 S 0.03 0.98 23.27 -56.49 -1.31 -0.34 16 6 C -0.25 -7.88 10.81 66.68 0.72 -7.16 16 7 C -0.06 -1.97 5.82 -20.45 -0.12 -2.09 16 8 C -0.09 -2.07 9.92 71.24 0.71 -1.37 16 9 C -0.20 -8.07 5.86 -21.32 -0.13 -8.19 16 10 C -0.04 -1.49 9.58 22.54 0.22 -1.28 16 11 C -0.22 -9.85 7.24 22.29 0.16 -9.69 16 12 C 0.08 4.06 5.14 -21.24 -0.11 3.95 16 13 C -0.51 -27.60 9.02 23.29 0.21 -27.39 16 14 H 0.05 3.11 7.83 -2.91 -0.02 3.08 16 15 C 0.02 0.82 5.33 85.20 0.45 1.28 16 16 N -0.81 -42.56 13.66 21.81 0.30 -42.26 16 17 Si 1.10 45.07 25.00 68.60 1.71 46.78 16 18 H -0.24 -8.86 6.69 99.48 0.67 -8.20 16 19 H -0.26 -11.01 7.02 99.48 0.70 -10.31 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 24 H 0.19 4.40 8.06 -2.91 -0.02 4.38 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.55 7.30 -2.39 -0.02 1.53 16 27 H 0.08 1.53 8.11 -2.39 -0.02 1.52 16 28 H 0.15 4.49 7.37 -2.91 -0.02 4.47 16 29 H 0.12 5.19 4.75 -2.91 -0.01 5.18 16 30 H 0.28 14.83 8.73 -92.71 -0.81 14.02 16 Total: -1.00 -60.81 269.15 4.55 -56.26 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.06 Total: 13.48 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 3.66 Total: -56.09 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.30 Total: -42.26 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.87 Total: -17.83 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.71 Total: 46.78 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -1.31 Total: -0.34 kcal Total: -60.81 4.55 -56.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.995 kcal (2) G-P(sol) polarization free energy of solvation -60.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds