Wall clock time and date at job start Mon Mar 30 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86803 * 119.99918 * 2 1 4 4 H 1.48503 * 109.46810 * 89.99954 * 3 2 1 5 5 H 1.48502 * 109.47049 * 209.99244 * 3 2 1 6 6 H 1.48497 * 109.47269 * 329.99638 * 3 2 1 7 7 C 1.40073 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99471 * 20.92021 * 7 2 1 9 9 C 1.39911 * 120.00045 * 200.91809 * 7 2 1 10 10 C 1.37837 * 125.39527 * 191.61427 * 9 7 2 11 11 C 1.37505 * 115.04444 * 179.78913 * 10 9 7 12 12 C 1.36185 * 113.94912 * 0.50674 * 11 10 9 13 13 S 1.75587 * 110.54210 * 359.72034 * 12 11 10 14 14 C 1.51015 * 123.47320 * 179.69660 * 12 11 10 15 15 C 1.53153 * 113.65652 * 216.03921 * 14 12 11 16 16 C 1.53896 * 86.88573 * 219.91578 * 15 14 12 17 17 C 1.53120 * 113.72843 * 117.69492 * 14 12 11 18 18 C 1.52776 * 111.82826 * 346.82080 * 14 12 11 19 19 C 1.53276 * 108.72501 * 45.51986 * 18 14 12 20 20 C 1.52259 * 123.74662 * 180.23117 * 11 10 9 21 21 H 0.97003 * 120.00206 * 174.65906 * 1 2 3 22 22 H 1.08001 * 122.47665 * 359.97438 * 10 9 7 23 23 H 1.08995 * 113.64515 * 334.42215 * 15 14 12 24 24 H 1.09002 * 113.64328 * 105.42030 * 15 14 12 25 25 H 1.08996 * 113.60130 * 270.40363 * 16 15 14 26 26 H 1.09006 * 113.59665 * 139.55713 * 16 15 14 27 27 H 1.09003 * 113.64453 * 254.52083 * 17 14 12 28 28 H 1.09002 * 113.64182 * 25.41933 * 17 14 12 29 29 H 1.08991 * 109.58110 * 285.74890 * 18 14 12 30 30 H 1.09006 * 109.59601 * 165.29473 * 18 14 12 31 31 H 1.08998 * 109.41375 * 172.02008 * 19 18 14 32 32 H 1.08997 * 109.35608 * 52.19082 * 19 18 14 33 33 H 1.09005 * 109.48926 * 280.25386 * 20 11 10 34 34 H 1.09001 * 109.49400 * 40.30681 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4901 2.0464 1.4001 5 1 3.5403 1.4402 -0.6999 6 1 1.4402 2.6527 -0.7001 7 6 2.0091 -1.2131 0.0005 8 1 1.5224 -2.1176 -0.3330 9 6 3.3390 -1.2528 0.4332 10 6 4.1993 -2.3177 0.2727 11 6 5.4642 -2.1252 0.7765 12 6 5.6470 -0.9092 1.3617 13 16 4.1752 0.0443 1.2741 14 6 6.9497 -0.4746 1.9900 15 6 6.7701 0.3892 3.2419 16 6 7.9498 1.2327 2.7268 17 6 7.5833 0.7446 1.3142 18 6 7.9090 -1.6486 2.1785 19 6 7.9250 -2.4824 0.8925 20 6 6.5718 -3.1674 0.7025 21 1 -0.4850 -0.8364 -0.0782 22 1 3.9027 -3.2343 -0.2154 23 1 5.8242 0.9301 3.2677 24 1 6.9831 -0.1387 4.1715 25 1 8.9218 0.8802 3.0719 26 1 7.8135 2.3050 2.8670 27 1 8.4486 0.5019 0.6973 28 1 6.8638 1.3836 0.8022 29 1 7.5712 -2.2663 3.0106 30 1 8.9114 -1.2725 2.3829 31 1 8.7074 -3.2382 0.9604 32 1 8.1237 -1.8305 0.0418 33 1 6.4262 -3.9092 1.4878 34 1 6.5453 -3.6578 -0.2706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261089040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:48 Heat of formation + Delta-G solvation = 7.407569 kcal Electronic energy + Delta-G solvation = -16131.154666 eV Core-core repulsion = 13733.111561 eV Total energy + Delta-G solvation = -2398.043105 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.52469 -36.34151 -34.31906 -32.80527 -29.16617 -27.98125 -25.26485 -25.09342 -22.46400 -22.11369 -19.93692 -18.78681 -17.97523 -16.98919 -15.86149 -14.97071 -14.56986 -14.02240 -13.83387 -13.26341 -13.10971 -12.88988 -12.56792 -12.16052 -11.71528 -11.64771 -11.52784 -11.32692 -10.81953 -10.80551 -10.57438 -10.37390 -10.24049 -9.95976 -9.81637 -9.69535 -9.37534 -9.23956 -8.79015 -7.65942 -7.30450 -6.86917 -4.50680 2.48219 2.76774 3.14405 3.27500 3.43773 3.82859 3.94358 4.00591 4.92677 5.06114 5.11114 5.15494 5.24436 5.51656 5.58455 5.81642 5.92648 5.96121 6.10157 6.15992 6.26184 6.26251 6.28400 6.40795 6.44504 6.50155 6.58485 6.76403 6.85338 6.93155 7.20473 7.25529 7.47044 7.63354 7.99064 8.05609 8.36243 8.52061 9.73774 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.009285 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.676839 B = 3014.947743 C = 3733.609604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.048 3.952 3 Si 0.980 3.020 4 H -0.239 1.239 5 H -0.226 1.226 6 H -0.252 1.252 7 C -0.457 4.457 8 H 0.091 0.909 9 C 0.053 3.947 10 C -0.353 4.353 11 C -0.021 4.021 12 C -0.312 4.312 13 S -0.036 6.036 14 C 0.023 3.977 15 C -0.134 4.134 16 C -0.143 4.143 17 C -0.132 4.132 18 C -0.085 4.085 19 C -0.111 4.111 20 C -0.056 4.056 21 H 0.291 0.709 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.327 0.937 2.736 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.165 1.165 5 H -0.150 1.150 6 H -0.176 1.176 7 C -0.492 4.492 8 H 0.108 0.892 9 C -0.065 4.065 10 C -0.377 4.377 11 C -0.032 4.032 12 C -0.426 4.426 13 S 0.223 5.777 14 C 0.021 3.979 15 C -0.171 4.171 16 C -0.181 4.181 17 C -0.169 4.169 18 C -0.124 4.124 19 C -0.149 4.149 20 C -0.095 4.095 21 H 0.103 0.897 22 H 0.118 0.882 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.656 3.919 3.258 11.812 hybrid contribution 0.184 -3.240 -0.570 3.295 sum 10.840 0.679 2.688 11.189 Atomic orbital electron populations 1.70560 1.07940 1.33560 1.29273 1.27345 0.95683 1.04207 0.90332 0.84217 0.78490 0.74896 0.82208 1.16495 1.14990 1.17647 1.20113 0.95210 0.97532 1.36386 0.89160 1.21461 0.95766 0.93849 0.95449 1.19484 0.94003 1.01920 1.22316 1.18996 0.93902 0.93279 0.97011 1.23355 0.97764 0.99231 1.22246 1.83485 1.08139 1.23214 1.62890 1.19558 0.91440 0.92683 0.94239 1.23015 0.98315 0.98191 0.97590 1.22879 0.98289 0.99228 0.97682 1.22992 1.00044 0.98211 0.95687 1.21259 0.97437 0.95921 0.97762 1.21437 0.96736 0.98516 0.98191 1.20403 0.92408 0.96066 1.00657 0.89737 0.88214 0.90151 0.92121 0.90815 0.92176 0.92223 0.90235 0.92012 0.92415 0.92809 0.92071 0.92089 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.69 13.66 55.56 0.76 -19.93 16 2 C 0.05 1.26 5.50 -17.27 -0.10 1.16 16 3 Si 0.98 22.06 24.77 -169.99 -4.21 17.85 16 4 H -0.24 -5.21 6.85 56.52 0.39 -4.82 16 5 H -0.23 -5.05 6.54 56.52 0.37 -4.68 16 6 H -0.25 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.34 9.63 -38.27 -0.37 -12.71 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.05 1.40 5.78 -39.10 -0.23 1.18 16 10 C -0.35 -8.91 10.01 -40.00 -0.40 -9.31 16 11 C -0.02 -0.48 5.77 -104.85 -0.61 -1.08 16 12 C -0.31 -6.88 5.60 -34.89 -0.20 -7.08 16 13 S -0.04 -0.87 15.99 -107.50 -1.72 -2.59 16 14 C 0.02 0.41 0.95 -155.48 -0.15 0.26 16 15 C -0.13 -2.21 7.20 -26.19 -0.19 -2.40 16 16 C -0.14 -2.02 7.75 -25.80 -0.20 -2.22 16 17 C -0.13 -2.15 7.20 -26.21 -0.19 -2.34 16 18 C -0.09 -1.31 5.03 -26.70 -0.13 -1.45 16 19 C -0.11 -1.72 5.84 -26.66 -0.16 -1.87 16 20 C -0.06 -1.01 6.11 -27.18 -0.17 -1.18 16 21 H 0.29 7.32 8.73 -40.82 -0.36 6.96 16 22 H 0.10 2.47 8.06 -52.49 -0.42 2.04 16 23 H 0.08 1.45 7.18 -51.93 -0.37 1.08 16 24 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 25 H 0.07 0.91 7.78 -51.93 -0.40 0.51 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 28 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.98 8.12 -51.93 -0.42 0.55 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -26.92 277.68 -9.06 -35.99 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.01 Total: 3.54 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: -3.07 Total: -39.04 kcal Atomic # 7 Polarization: -20.69 SS G_CDS: 0.76 Total: -19.93 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.21 Total: 17.85 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.72 Total: -2.59 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.92 -9.06 -35.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.396 kcal (2) G-P(sol) polarization free energy of solvation -26.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds