Wall clock time and date at job start Mon Mar 30 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86803 * 119.99918 * 2 1 4 4 H 1.48503 * 109.46810 * 89.99954 * 3 2 1 5 5 H 1.48502 * 109.47049 * 209.99244 * 3 2 1 6 6 H 1.48497 * 109.47269 * 329.99638 * 3 2 1 7 7 C 1.40073 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99471 * 20.92021 * 7 2 1 9 9 C 1.39911 * 120.00045 * 200.91809 * 7 2 1 10 10 C 1.37837 * 125.39527 * 191.61427 * 9 7 2 11 11 C 1.37505 * 115.04444 * 179.78913 * 10 9 7 12 12 C 1.36185 * 113.94912 * 0.50674 * 11 10 9 13 13 S 1.75587 * 110.54210 * 359.72034 * 12 11 10 14 14 C 1.51015 * 123.47320 * 179.69660 * 12 11 10 15 15 C 1.53153 * 113.65652 * 216.03921 * 14 12 11 16 16 C 1.53896 * 86.88573 * 219.91578 * 15 14 12 17 17 C 1.53120 * 113.72843 * 117.69492 * 14 12 11 18 18 C 1.52776 * 111.82826 * 346.82080 * 14 12 11 19 19 C 1.53276 * 108.72501 * 45.51986 * 18 14 12 20 20 C 1.52259 * 123.74662 * 180.23117 * 11 10 9 21 21 H 0.97003 * 120.00206 * 174.65906 * 1 2 3 22 22 H 1.08001 * 122.47665 * 359.97438 * 10 9 7 23 23 H 1.08995 * 113.64515 * 334.42215 * 15 14 12 24 24 H 1.09002 * 113.64328 * 105.42030 * 15 14 12 25 25 H 1.08996 * 113.60130 * 270.40363 * 16 15 14 26 26 H 1.09006 * 113.59665 * 139.55713 * 16 15 14 27 27 H 1.09003 * 113.64453 * 254.52083 * 17 14 12 28 28 H 1.09002 * 113.64182 * 25.41933 * 17 14 12 29 29 H 1.08991 * 109.58110 * 285.74890 * 18 14 12 30 30 H 1.09006 * 109.59601 * 165.29473 * 18 14 12 31 31 H 1.08998 * 109.41375 * 172.02008 * 19 18 14 32 32 H 1.08997 * 109.35608 * 52.19082 * 19 18 14 33 33 H 1.09005 * 109.48926 * 280.25386 * 20 11 10 34 34 H 1.09001 * 109.49400 * 40.30681 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4901 2.0464 1.4001 5 1 3.5403 1.4402 -0.6999 6 1 1.4402 2.6527 -0.7001 7 6 2.0091 -1.2131 0.0005 8 1 1.5224 -2.1176 -0.3330 9 6 3.3390 -1.2528 0.4332 10 6 4.1993 -2.3177 0.2727 11 6 5.4642 -2.1252 0.7765 12 6 5.6470 -0.9092 1.3617 13 16 4.1752 0.0443 1.2741 14 6 6.9497 -0.4746 1.9900 15 6 6.7701 0.3892 3.2419 16 6 7.9498 1.2327 2.7268 17 6 7.5833 0.7446 1.3142 18 6 7.9090 -1.6486 2.1785 19 6 7.9250 -2.4824 0.8925 20 6 6.5718 -3.1674 0.7025 21 1 -0.4850 -0.8364 -0.0782 22 1 3.9027 -3.2343 -0.2154 23 1 5.8242 0.9301 3.2677 24 1 6.9831 -0.1387 4.1715 25 1 8.9218 0.8802 3.0719 26 1 7.8135 2.3050 2.8670 27 1 8.4486 0.5019 0.6973 28 1 6.8638 1.3836 0.8022 29 1 7.5712 -2.2663 3.0106 30 1 8.9114 -1.2725 2.3829 31 1 8.7074 -3.2382 0.9604 32 1 8.1237 -1.8305 0.0418 33 1 6.4262 -3.9092 1.4878 34 1 6.5453 -3.6578 -0.2706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:48 Heat of formation + Delta-G solvation = -5.832635 kcal Electronic energy + Delta-G solvation = -16131.728805 eV Core-core repulsion = 13733.111561 eV Total energy + Delta-G solvation = -2398.617244 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89353 -38.03883 -36.12202 -34.41472 -30.96956 -29.35550 -26.84698 -26.52733 -23.93772 -23.60416 -21.60390 -20.72134 -19.47460 -18.58027 -17.50065 -16.62223 -15.96992 -15.58614 -15.46623 -14.91177 -14.74507 -14.25210 -14.18607 -13.69612 -13.39703 -13.11454 -13.06893 -12.93662 -12.49798 -12.18429 -12.02596 -11.91786 -11.76406 -11.55648 -11.38665 -11.15349 -11.05007 -10.76563 -10.51106 -9.66020 -9.21410 -8.77585 -6.53043 0.57728 0.94875 1.29912 1.33838 1.58348 1.99293 2.12323 2.13613 2.90719 3.78576 3.86425 3.91638 4.03110 4.21585 4.33589 4.50577 4.53627 4.79910 4.87012 4.89191 4.94099 5.02931 5.06939 5.08758 5.13290 5.18222 5.21900 5.24874 5.30302 5.41313 5.53151 5.54506 5.71540 5.74087 5.97819 6.17262 6.45704 6.55106 7.73155 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.009285 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.676839 B = 3014.947743 C = 3733.609604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.022 3.978 3 Si 1.005 2.995 4 H -0.228 1.228 5 H -0.229 1.229 6 H -0.228 1.228 7 C -0.496 4.496 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.364 4.364 11 C -0.048 4.048 12 C -0.288 4.288 13 S -0.035 6.035 14 C 0.006 3.994 15 C -0.140 4.140 16 C -0.122 4.122 17 C -0.134 4.134 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.055 4.055 21 H 0.285 0.715 22 H 0.091 0.909 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.370 1.753 4.002 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.197 4.197 3 Si 0.822 3.178 4 H -0.153 1.153 5 H -0.153 1.153 6 H -0.151 1.151 7 C -0.532 4.532 8 H 0.081 0.919 9 C -0.098 4.098 10 C -0.389 4.389 11 C -0.058 4.058 12 C -0.402 4.402 13 S 0.225 5.775 14 C 0.004 3.996 15 C -0.178 4.178 16 C -0.159 4.159 17 C -0.172 4.172 18 C -0.120 4.120 19 C -0.144 4.144 20 C -0.094 4.094 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.122 0.878 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.671 4.727 4.520 16.063 hybrid contribution -0.905 -3.604 -0.909 3.826 sum 13.766 1.123 3.612 14.276 Atomic orbital electron populations 1.70607 1.08191 1.33210 1.31408 1.28275 0.95860 1.06097 0.89483 0.83970 0.77850 0.72999 0.83027 1.15323 1.15286 1.15129 1.20040 0.96259 0.97329 1.39552 0.91894 1.21654 0.96063 0.95514 0.96526 1.19824 0.95447 1.01438 1.22220 1.19475 0.94234 0.95011 0.97100 1.24219 0.98481 0.98213 1.19308 1.83407 1.09209 1.22694 1.62214 1.20002 0.89872 0.94614 0.95153 1.23015 0.98680 0.98459 0.97641 1.22828 0.98421 0.99629 0.94994 1.22957 1.00066 0.96896 0.97274 1.21313 0.98357 0.94696 0.97678 1.21445 0.95692 0.99229 0.98065 1.20504 0.92409 0.95155 1.01360 0.90341 0.89103 0.92444 0.90609 0.87769 0.91117 0.90332 0.92502 0.91972 0.88877 0.89175 0.92540 0.91100 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.32 13.66 21.86 0.30 -44.03 16 2 C 0.02 1.19 5.50 85.28 0.47 1.66 16 3 Si 1.01 45.10 24.77 68.60 1.70 46.80 16 4 H -0.23 -9.74 6.85 99.48 0.68 -9.06 16 5 H -0.23 -10.23 6.54 99.48 0.65 -9.58 16 6 H -0.23 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.50 -28.54 9.63 23.12 0.22 -28.32 16 8 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 9 C 0.02 1.13 5.78 22.58 0.13 1.26 16 10 C -0.36 -18.93 10.01 22.00 0.22 -18.71 16 11 C -0.05 -2.12 5.77 -20.01 -0.12 -2.24 16 12 C -0.29 -12.29 5.60 25.31 0.14 -12.15 16 13 S -0.03 -1.66 15.99 -56.49 -0.90 -2.56 16 14 C 0.01 0.19 0.95 -52.81 -0.05 0.14 16 15 C -0.14 -4.13 7.20 30.95 0.22 -3.91 16 16 C -0.12 -2.81 7.75 31.19 0.24 -2.57 16 17 C -0.13 -3.86 7.20 30.93 0.22 -3.64 16 18 C -0.08 -2.10 5.03 30.61 0.15 -1.95 16 19 C -0.11 -2.80 5.84 30.64 0.18 -2.62 16 20 C -0.06 -1.84 6.11 30.30 0.19 -1.66 16 21 H 0.29 15.30 8.73 -92.71 -0.81 14.49 16 22 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 23 H 0.06 1.95 7.18 -2.39 -0.02 1.93 16 24 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 25 H 0.10 1.85 7.78 -2.39 -0.02 1.83 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 28 H 0.06 1.89 8.09 -2.39 -0.02 1.87 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.81 7.48 -2.38 -0.02 1.79 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -60.95 277.68 4.27 -56.68 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.95 Total: 17.81 kcal Atomic # 6 Polarization: -76.93 SS G_CDS: 2.22 Total: -74.70 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.30 Total: -44.03 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.70 Total: 46.80 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -0.90 Total: -2.56 kcal Total: -60.95 4.27 -56.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.843 kcal (2) G-P(sol) polarization free energy of solvation -60.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds