Wall clock time and date at job start Mon Mar 30 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35527 * 117.00039 * 2 1 4 4 C 1.41243 * 120.07592 * 270.22478 * 3 2 1 5 5 C 1.45500 * 129.13137 * 359.96655 * 4 3 2 6 6 C 1.50697 * 122.56622 * 0.33269 * 5 4 3 7 7 C 1.31766 * 114.86696 * 180.30844 * 5 4 3 8 8 S 1.75264 * 111.44064 * 359.97438 * 7 5 4 9 9 C 1.39804 * 118.99700 * 180.29544 * 4 3 2 10 10 C 1.40685 * 120.21889 * 359.72420 * 9 4 3 11 11 C 1.35594 * 121.01563 * 0.02644 * 10 9 4 12 12 C 1.40626 * 120.08247 * 89.99368 * 3 2 1 13 13 C 1.41038 * 120.11347 * 359.97438 * 12 3 2 14 14 H 1.07998 * 120.00673 * 28.72300 * 13 12 3 15 15 C 1.39797 * 119.99437 * 208.72216 * 13 12 3 16 16 N 1.30979 * 119.99968 * 197.78774 * 15 13 12 17 17 Si 1.86801 * 119.99952 * 17.79172 * 15 13 12 18 18 H 1.48498 * 109.47070 * 269.99907 * 17 15 13 19 19 H 1.48503 * 109.47042 * 30.00065 * 17 15 13 20 20 H 1.48500 * 109.47227 * 149.99744 * 17 15 13 21 21 H 1.09001 * 109.47026 * 60.00892 * 1 2 3 22 22 H 1.09003 * 109.47388 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47816 * 300.00402 * 1 2 3 24 24 H 1.08994 * 109.47523 * 89.99651 * 6 5 4 25 25 H 1.09004 * 109.47125 * 209.99698 * 6 5 4 26 26 H 1.08996 * 109.47232 * 329.99512 * 6 5 4 27 27 H 1.08001 * 124.27839 * 180.02562 * 7 5 4 28 28 H 1.08003 * 119.49161 * 180.02562 * 10 9 4 29 29 H 1.07998 * 119.92032 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00187 * 355.43496 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 2.3614 1.8404 -1.2223 5 6 2.1227 1.3823 -2.5825 6 6 1.4460 0.0714 -2.8900 7 6 2.5431 2.2017 -3.5249 8 16 3.2829 3.6367 -2.8429 9 6 3.0017 3.0829 -1.1960 10 6 3.3173 3.6910 0.0328 11 6 3.0105 3.0900 1.2089 12 6 2.3642 1.8357 1.2168 13 6 2.0453 1.2114 2.4407 14 1 2.0004 0.1341 2.5018 15 6 1.7874 1.9872 3.5747 16 7 1.8360 1.4433 4.7652 17 14 1.3734 3.7996 3.3920 18 1 2.6238 4.5996 3.4341 19 1 0.6868 4.0221 2.0941 20 1 0.4805 4.2178 4.5024 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.3696 0.2263 -2.9624 25 1 1.8216 -0.3182 -3.8362 26 1 1.6576 -0.6422 -2.0937 27 1 2.4435 2.0133 -4.5836 28 1 3.8116 4.6512 0.0394 29 1 3.2614 3.5725 2.1420 30 1 1.9854 0.4893 4.8568 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:33 Heat of formation + Delta-G solvation = -12.113367 kcal Electronic energy + Delta-G solvation = -15879.118063 eV Core-core repulsion = 13344.395372 eV Total energy + Delta-G solvation = -2534.722691 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.07471 -36.39155 -35.54342 -33.47962 -30.10313 -28.99115 -27.42592 -26.16900 -24.56526 -22.27035 -20.61838 -19.35565 -17.80662 -17.55710 -15.60916 -15.29217 -14.74079 -14.49916 -14.02949 -13.58561 -13.51405 -13.27623 -13.13330 -12.29597 -12.03646 -11.96632 -11.73678 -11.27143 -11.08727 -10.87382 -10.57112 -10.32066 -10.05398 -9.90270 -9.54148 -9.33176 -8.74798 -8.34651 -7.70947 -7.45647 -6.87321 -4.61832 1.57018 2.26921 2.39724 2.81987 3.03239 3.10074 3.22655 3.41750 3.87072 4.22297 4.80264 5.24744 5.26497 5.56625 5.84247 5.88292 5.92237 6.05587 6.06419 6.18185 6.25667 6.32048 6.45414 6.65024 6.77504 6.89535 7.11794 7.24768 7.39341 7.48132 7.65771 8.00722 8.27004 8.54464 8.81803 9.84239 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.009654 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.515210 B = 2899.791289 C = 3716.248920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C -0.008 4.008 4 C -0.038 4.038 5 C -0.078 4.078 6 C -0.097 4.097 7 C -0.208 4.208 8 S 0.009 5.991 9 C -0.226 4.226 10 C -0.049 4.049 11 C -0.195 4.195 12 C 0.083 3.917 13 C -0.487 4.487 14 H 0.086 0.914 15 C 0.039 3.961 16 N -0.804 5.804 17 Si 1.067 2.933 18 H -0.273 1.273 19 H -0.262 1.262 20 H -0.285 1.285 21 H 0.030 0.970 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 1.530 -8.954 9.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.233 6.233 3 C -0.056 4.056 4 C -0.044 4.044 5 C -0.092 4.092 6 C -0.156 4.156 7 C -0.341 4.341 8 S 0.270 5.730 9 C -0.340 4.340 10 C -0.071 4.071 11 C -0.216 4.216 12 C 0.079 3.921 13 C -0.515 4.515 14 H 0.104 0.896 15 C -0.181 4.181 16 N -0.426 5.426 17 Si 0.893 3.107 18 H -0.199 1.199 19 H -0.187 1.187 20 H -0.212 1.212 21 H 0.049 0.951 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.169 0.831 28 H 0.122 0.878 29 H 0.136 0.864 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.192 3.912 -8.671 9.588 hybrid contribution -0.387 -2.535 -0.242 2.576 sum -1.579 1.377 -8.913 9.156 Atomic orbital electron populations 1.22843 0.82753 1.00843 0.99815 1.85915 1.17673 1.25884 1.93863 1.18207 1.07058 0.90770 0.89547 1.19103 1.00024 0.93289 0.91991 1.19763 1.00647 0.97332 0.91440 1.20625 0.99016 0.94124 1.01862 1.24489 1.08670 0.99070 1.01882 1.83357 1.67325 1.23570 0.98700 1.21722 1.16534 1.00379 0.95347 1.19774 0.99044 0.98079 0.90189 1.20845 1.05175 0.98789 0.96752 1.17783 0.90687 0.90824 0.92853 1.20556 1.40776 0.96753 0.93407 0.89562 1.27349 0.91297 1.08206 0.91295 1.70579 1.31662 1.15799 1.24565 0.83682 0.77804 0.72222 0.77012 1.19930 1.18650 1.21204 0.95131 0.90885 0.93901 0.92022 0.92579 0.89800 0.83089 0.87771 0.86373 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.53 101.05 1.06 1.67 16 2 O -0.32 -7.17 7.54 -18.28 -0.14 -7.30 16 3 C -0.01 -0.19 5.82 -37.54 -0.22 -0.41 16 4 C -0.04 -0.85 6.02 -105.28 -0.63 -1.48 16 5 C -0.08 -1.50 5.97 -103.62 -0.62 -2.12 16 6 C -0.10 -1.56 8.89 36.00 0.32 -1.24 16 7 C -0.21 -3.60 10.75 28.84 0.31 -3.29 16 8 S 0.01 0.17 23.23 -107.50 -2.50 -2.33 16 9 C -0.23 -4.93 6.50 -38.07 -0.25 -5.18 16 10 C -0.05 -1.06 9.98 -39.60 -0.40 -1.45 16 11 C -0.20 -4.56 7.17 -39.44 -0.28 -4.84 16 12 C 0.08 2.09 5.13 -106.85 -0.55 1.55 16 13 C -0.49 -12.68 9.03 -37.94 -0.34 -13.02 16 14 H 0.09 2.38 7.85 -52.49 -0.41 1.97 16 15 C 0.04 0.99 5.41 -17.33 -0.09 0.89 16 16 N -0.80 -20.74 13.66 55.54 0.76 -19.98 16 17 Si 1.07 23.11 24.90 -169.99 -4.23 18.87 16 18 H -0.27 -5.52 6.43 56.52 0.36 -5.16 16 19 H -0.26 -5.68 7.04 56.52 0.40 -5.28 16 20 H -0.29 -6.00 7.11 56.52 0.40 -5.59 16 21 H 0.03 0.53 7.15 -51.93 -0.37 0.16 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.91 7.60 -51.93 -0.39 0.51 16 25 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 26 H 0.08 1.46 6.19 -51.93 -0.32 1.14 16 27 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 29 H 0.12 2.65 4.40 -52.49 -0.23 2.42 16 30 H 0.29 7.29 8.73 -40.82 -0.36 6.93 16 LS Contribution 263.55 15.07 3.97 3.97 Total: -1.00 -27.03 263.55 -6.86 -33.89 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.04 Total: 1.79 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -1.69 Total: -28.92 kcal Atomic # 7 Polarization: -20.74 SS G_CDS: 0.76 Total: -19.98 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.14 Total: -7.30 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.23 Total: 18.87 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.50 Total: -2.33 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.03 -6.86 -33.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.779 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds