Wall clock time and date at job start Mon Mar 30 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35527 * 117.00039 * 2 1 4 4 C 1.41243 * 120.07592 * 270.22478 * 3 2 1 5 5 C 1.45500 * 129.13137 * 359.96655 * 4 3 2 6 6 C 1.50697 * 122.56622 * 0.33269 * 5 4 3 7 7 C 1.31766 * 114.86696 * 180.30844 * 5 4 3 8 8 S 1.75264 * 111.44064 * 359.97438 * 7 5 4 9 9 C 1.39804 * 118.99700 * 180.29544 * 4 3 2 10 10 C 1.40685 * 120.21889 * 359.72420 * 9 4 3 11 11 C 1.35594 * 121.01563 * 0.02644 * 10 9 4 12 12 C 1.40626 * 120.08247 * 89.99368 * 3 2 1 13 13 C 1.41038 * 120.11347 * 359.97438 * 12 3 2 14 14 H 1.07998 * 120.00673 * 28.72300 * 13 12 3 15 15 C 1.39797 * 119.99437 * 208.72216 * 13 12 3 16 16 N 1.30979 * 119.99968 * 197.78774 * 15 13 12 17 17 Si 1.86801 * 119.99952 * 17.79172 * 15 13 12 18 18 H 1.48498 * 109.47070 * 269.99907 * 17 15 13 19 19 H 1.48503 * 109.47042 * 30.00065 * 17 15 13 20 20 H 1.48500 * 109.47227 * 149.99744 * 17 15 13 21 21 H 1.09001 * 109.47026 * 60.00892 * 1 2 3 22 22 H 1.09003 * 109.47388 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47816 * 300.00402 * 1 2 3 24 24 H 1.08994 * 109.47523 * 89.99651 * 6 5 4 25 25 H 1.09004 * 109.47125 * 209.99698 * 6 5 4 26 26 H 1.08996 * 109.47232 * 329.99512 * 6 5 4 27 27 H 1.08001 * 124.27839 * 180.02562 * 7 5 4 28 28 H 1.08003 * 119.49161 * 180.02562 * 10 9 4 29 29 H 1.07998 * 119.92032 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00187 * 355.43496 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 2.3614 1.8404 -1.2223 5 6 2.1227 1.3823 -2.5825 6 6 1.4460 0.0714 -2.8900 7 6 2.5431 2.2017 -3.5249 8 16 3.2829 3.6367 -2.8429 9 6 3.0017 3.0829 -1.1960 10 6 3.3173 3.6910 0.0328 11 6 3.0105 3.0900 1.2089 12 6 2.3642 1.8357 1.2168 13 6 2.0453 1.2114 2.4407 14 1 2.0004 0.1341 2.5018 15 6 1.7874 1.9872 3.5747 16 7 1.8360 1.4433 4.7652 17 14 1.3734 3.7996 3.3920 18 1 2.6238 4.5996 3.4341 19 1 0.6868 4.0221 2.0941 20 1 0.4805 4.2178 4.5024 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.3696 0.2263 -2.9624 25 1 1.8216 -0.3182 -3.8362 26 1 1.6576 -0.6422 -2.0937 27 1 2.4435 2.0133 -4.5836 28 1 3.8116 4.6512 0.0394 29 1 3.2614 3.5725 2.1420 30 1 1.9854 0.4893 4.8568 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:33 Heat of formation + Delta-G solvation = -27.231200 kcal Electronic energy + Delta-G solvation = -15879.773621 eV Core-core repulsion = 13344.395372 eV Total energy + Delta-G solvation = -2535.378250 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77302 -38.06059 -37.19012 -35.26425 -31.84467 -30.62837 -28.84528 -27.76522 -26.33292 -23.95445 -22.36032 -21.01288 -19.52535 -19.19723 -17.24955 -16.97489 -16.42690 -16.16701 -15.65041 -15.32481 -15.01455 -14.86800 -14.64842 -13.87412 -13.56316 -13.50546 -13.36833 -12.84068 -12.61768 -12.53804 -12.11812 -12.00683 -11.60618 -11.55357 -11.35163 -11.06311 -10.45684 -10.03606 -9.48446 -9.26971 -8.46166 -6.53803 -0.03015 0.48231 0.89704 1.26629 1.31453 1.47346 1.50308 1.73072 2.11838 2.44546 3.03879 3.47759 3.81884 4.11303 4.28365 4.46020 4.53605 4.55909 4.64923 4.70491 4.79379 4.85658 4.96592 5.03394 5.17274 5.29804 5.44217 5.45840 5.57600 5.73687 5.92942 6.15090 6.31584 6.69035 7.05715 7.91605 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.009654 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.515210 B = 2899.791289 C = 3716.248920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.334 6.334 3 C -0.021 4.021 4 C -0.058 4.058 5 C -0.106 4.106 6 C -0.092 4.092 7 C -0.190 4.190 8 S 0.060 5.940 9 C -0.241 4.241 10 C -0.052 4.052 11 C -0.207 4.207 12 C 0.060 3.940 13 C -0.517 4.517 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.833 5.833 17 Si 1.097 2.903 18 H -0.247 1.247 19 H -0.265 1.265 20 H -0.276 1.276 21 H 0.046 0.954 22 H 0.104 0.896 23 H 0.021 0.979 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.194 0.806 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 3.136 -12.343 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.251 6.251 3 C -0.069 4.069 4 C -0.065 4.065 5 C -0.119 4.119 6 C -0.151 4.151 7 C -0.323 4.323 8 S 0.322 5.678 9 C -0.355 4.355 10 C -0.073 4.073 11 C -0.227 4.227 12 C 0.056 3.944 13 C -0.546 4.546 14 H 0.068 0.932 15 C -0.203 4.203 16 N -0.456 5.456 17 Si 0.917 3.083 18 H -0.173 1.173 19 H -0.190 1.190 20 H -0.203 1.203 21 H 0.064 0.936 22 H 0.122 0.878 23 H 0.040 0.960 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.211 0.789 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.033 5.510 -12.072 13.310 hybrid contribution -0.389 -3.049 0.449 3.106 sum -1.422 2.461 -11.623 11.965 Atomic orbital electron populations 1.22968 0.80736 1.02833 0.99458 1.85839 1.19555 1.25700 1.93957 1.18531 1.07282 0.90904 0.90188 1.19532 1.00021 0.93733 0.93194 1.19961 1.02581 0.99354 0.89999 1.20614 0.99680 0.92210 1.02573 1.25025 1.05958 0.97689 1.03652 1.83230 1.66382 1.23228 0.95010 1.22334 1.14896 1.00374 0.97920 1.20135 0.98384 0.99193 0.89637 1.20966 1.05496 0.98285 0.97962 1.18030 0.91373 0.92080 0.92917 1.20338 1.44255 0.95062 0.94992 0.93221 1.28330 0.90362 1.10984 0.90646 1.70649 1.34700 1.15268 1.25013 0.83333 0.78819 0.69206 0.76912 1.17259 1.19000 1.20278 0.93564 0.87799 0.96019 0.90800 0.89544 0.91860 0.78884 0.84475 0.85880 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.30 10.53 113.37 1.19 2.50 16 2 O -0.33 -15.43 7.54 -88.31 -0.67 -16.10 16 3 C -0.02 -1.05 5.82 23.59 0.14 -0.91 16 4 C -0.06 -2.51 6.02 -20.29 -0.12 -2.63 16 5 C -0.11 -3.72 5.97 -18.73 -0.11 -3.84 16 6 C -0.09 -2.66 8.89 71.24 0.63 -2.02 16 7 C -0.19 -5.63 10.75 67.08 0.72 -4.91 16 8 S 0.06 1.91 23.23 -56.49 -1.31 0.59 16 9 C -0.24 -9.92 6.50 23.25 0.15 -9.77 16 10 C -0.05 -2.14 9.98 22.26 0.22 -1.92 16 11 C -0.21 -9.60 7.17 22.36 0.16 -9.44 16 12 C 0.06 3.12 5.13 -21.31 -0.11 3.02 16 13 C -0.52 -28.60 9.03 23.33 0.21 -28.39 16 14 H 0.05 2.99 7.85 -2.91 -0.02 2.97 16 15 C 0.01 0.60 5.41 85.20 0.46 1.06 16 16 N -0.83 -45.27 13.66 21.81 0.30 -44.97 16 17 Si 1.10 47.06 24.90 68.60 1.71 48.77 16 18 H -0.25 -9.52 6.43 99.48 0.64 -8.88 16 19 H -0.27 -11.37 7.04 99.48 0.70 -10.67 16 20 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 21 H 0.05 1.57 7.15 -2.39 -0.02 1.55 16 22 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 1.92 7.60 -2.39 -0.02 1.90 16 25 H 0.09 1.94 8.12 -2.38 -0.02 1.92 16 26 H 0.06 2.10 6.19 -2.39 -0.01 2.09 16 27 H 0.19 4.08 8.06 -2.91 -0.02 4.05 16 28 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 29 H 0.12 5.47 4.40 -2.91 -0.01 5.46 16 30 H 0.28 15.16 8.73 -92.71 -0.81 14.35 16 Total: -1.00 -60.78 263.55 4.62 -56.16 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.05 Total: 12.80 kcal Atomic # 6 Polarization: -60.80 SS G_CDS: 3.55 Total: -57.25 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.30 Total: -44.97 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.67 Total: -16.10 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.71 Total: 48.77 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.59 kcal Total: -60.78 4.62 -56.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.930 kcal (2) G-P(sol) polarization free energy of solvation -60.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds