Wall clock time and date at job start Mon Mar 30 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46946 * 240.00546 * 3 2 1 5 5 H 1.48496 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00229 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 11 11 C 1.52997 * 109.47265 * 60.00237 * 9 7 2 12 12 N 1.46900 * 109.47171 * 184.99801 * 11 9 7 13 13 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 14 14 N 1.28723 * 121.08639 * 300.02202 * 13 9 7 15 15 S 1.69393 * 108.98661 * 180.02562 * 14 13 9 16 16 C 1.76510 * 96.11664 * 359.97438 * 15 14 13 17 17 C 1.38781 * 133.55161 * 180.02562 * 16 15 14 18 18 C 1.36722 * 119.75718 * 179.97438 * 17 16 15 19 19 C 1.38973 * 120.14989 * 359.97438 * 18 17 16 20 20 C 1.36040 * 121.15983 * 0.02562 * 19 18 17 21 21 C 1.40806 * 105.52321 * 359.74785 * 16 15 14 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46992 * 305.00351 * 11 9 7 24 24 H 1.08998 * 109.47097 * 64.99539 * 11 9 7 25 25 H 1.00898 * 110.99685 * 56.04556 * 12 11 9 26 26 H 1.00903 * 110.99628 * 179.97438 * 12 11 9 27 27 H 1.07997 * 120.12684 * 359.95508 * 17 16 15 28 28 H 1.08002 * 119.92460 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.42020 * 179.97438 * 19 18 17 30 30 H 1.08002 * 119.89415 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3710 -2.5800 -1.2494 12 7 -0.4522 -3.7952 -1.1906 13 6 2.2305 -3.6446 -0.0005 14 7 3.0816 -3.7913 -0.9550 15 16 4.0225 -5.1660 -0.6479 16 6 3.2357 -5.5967 0.8723 17 6 3.4197 -6.6244 1.7866 18 6 2.6304 -6.6906 2.9010 19 6 1.6476 -5.7324 3.1182 20 6 1.4485 -4.7158 2.2363 21 6 2.2490 -4.6134 1.0777 22 1 -0.4850 0.8400 0.0004 23 1 -0.2764 -1.7043 -1.2950 24 1 1.0024 -2.6115 -2.1374 25 1 -0.9994 -3.8205 -0.3433 26 1 -1.0432 -3.8714 -2.0049 27 1 4.1833 -7.3693 1.6183 28 1 2.7709 -7.4895 3.6140 29 1 1.0305 -5.7963 4.0022 30 1 0.6791 -3.9819 2.4257 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092472.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:13 Heat of formation + Delta-G solvation = 41.665001 kcal Electronic energy + Delta-G solvation = -15532.033295 eV Core-core repulsion = 13031.935360 eV Total energy + Delta-G solvation = -2500.097935 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.43845 -36.70252 -34.16291 -32.23641 -30.83613 -29.93951 -28.66401 -24.32181 -23.36155 -22.55450 -21.20827 -18.82659 -17.98337 -16.55759 -15.73851 -15.16031 -14.84292 -14.68995 -14.22503 -13.79683 -13.61990 -13.41326 -12.70818 -12.08543 -11.86618 -11.71785 -11.50828 -11.07964 -10.99758 -10.85229 -10.33891 -10.20388 -10.07827 -9.51877 -9.38679 -9.16522 -8.57665 -8.50417 -7.68180 -7.26107 -6.16248 -4.23305 1.05509 1.54087 2.03743 2.63176 2.93779 3.26806 3.30313 3.35681 4.03675 4.33706 4.93463 5.00786 5.12652 5.14325 5.48530 5.65231 5.67851 5.84386 6.13072 6.26828 6.48606 6.60237 6.63705 6.67892 6.88570 7.06642 7.26799 7.41708 7.75777 7.84137 7.93810 8.24374 8.33071 8.78797 9.40982 10.87980 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.007560 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.035323 B = 3702.783575 C = 3803.145953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.114 3.886 10 H 0.048 0.952 11 C 0.065 3.935 12 N -0.860 5.860 13 C 0.216 3.784 14 N -0.425 5.425 15 S 0.103 5.897 16 C -0.132 4.132 17 C -0.090 4.090 18 C -0.094 4.094 19 C -0.138 4.138 20 C -0.039 4.039 21 C -0.111 4.111 22 H 0.264 0.736 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.329 0.671 26 H 0.323 0.677 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -10.263 4.796 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.090 3.910 10 H 0.066 0.934 11 C -0.066 4.066 12 N -0.387 5.387 13 C 0.027 3.973 14 N -0.234 5.234 15 S 0.257 5.743 16 C -0.252 4.252 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.159 4.159 20 C -0.061 4.061 21 C -0.124 4.124 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.139 0.861 26 H 0.133 0.867 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.172 -10.449 2.814 11.277 hybrid contribution -1.416 1.587 1.330 2.508 sum 1.756 -8.863 4.144 9.940 Atomic orbital electron populations 1.69835 1.05865 1.27091 1.50191 1.24928 0.94971 0.99267 0.94531 0.86512 0.79545 0.82300 0.78928 1.20033 1.21127 1.20082 1.20948 0.93204 0.89014 1.51356 0.92058 1.17853 0.89734 0.87628 0.95765 0.93444 1.22042 0.96034 0.90322 0.98233 1.59038 1.29821 1.43707 1.06157 1.23261 0.93139 0.94478 0.86382 1.76107 1.10797 1.11013 1.25445 1.84561 1.44764 1.27643 1.17354 1.23490 1.01003 0.99703 1.00999 1.19870 1.00720 0.97009 0.93735 1.20898 0.95325 0.98669 0.96739 1.20655 0.99571 0.95609 1.00025 1.20805 0.96971 0.97124 0.91183 1.20493 0.98451 0.95587 0.97872 0.92602 0.90870 0.92889 0.86062 0.86715 0.85747 0.85558 0.85662 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 11.29 55.43 0.63 -23.23 16 2 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.64 8.45 -34.44 -0.29 -13.93 16 8 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 9 C 0.11 2.78 2.22 -92.92 -0.21 2.57 16 10 H 0.05 1.17 6.82 -51.93 -0.35 0.82 16 11 C 0.06 1.51 5.97 -3.83 -0.02 1.48 16 12 N -0.86 -16.84 9.34 -10.37 -0.10 -16.94 16 13 C 0.22 4.95 5.20 -81.23 -0.42 4.53 16 14 N -0.43 -9.98 11.47 34.00 0.39 -9.59 16 15 S 0.10 2.01 23.86 -107.50 -2.56 -0.56 16 16 C -0.13 -2.42 6.71 -38.41 -0.26 -2.67 16 17 C -0.09 -1.31 10.02 -39.93 -0.40 -1.71 16 18 C -0.09 -1.19 10.01 -39.86 -0.40 -1.59 16 19 C -0.14 -1.86 9.92 -40.10 -0.40 -2.26 16 20 C -0.04 -0.66 9.70 -39.25 -0.38 -1.04 16 21 C -0.11 -2.23 6.05 -105.14 -0.64 -2.87 16 22 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 23 H 0.07 1.85 5.95 -51.93 -0.31 1.54 16 24 H 0.05 1.32 7.96 -51.93 -0.41 0.91 16 25 H 0.33 6.04 8.99 -39.29 -0.35 5.69 16 26 H 0.32 5.60 9.08 -39.29 -0.36 5.24 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 2.15 7.15 -52.49 -0.38 1.78 16 LS Contribution 272.54 15.07 4.11 4.11 Total: -1.00 -28.86 272.54 -9.04 -37.90 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.97 Total: 8.23 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.51 Total: -15.85 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.92 Total: -49.76 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.56 Total: -0.56 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.86 -9.04 -37.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092472.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.562 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds