Wall clock time and date at job start Mon Mar 30 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46946 * 240.00546 * 3 2 1 5 5 H 1.48496 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00229 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 11 11 C 1.52997 * 109.47265 * 60.00237 * 9 7 2 12 12 N 1.46900 * 109.47171 * 184.99801 * 11 9 7 13 13 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 14 14 N 1.28723 * 121.08639 * 300.02202 * 13 9 7 15 15 S 1.69393 * 108.98661 * 180.02562 * 14 13 9 16 16 C 1.76510 * 96.11664 * 359.97438 * 15 14 13 17 17 C 1.38781 * 133.55161 * 180.02562 * 16 15 14 18 18 C 1.36722 * 119.75718 * 179.97438 * 17 16 15 19 19 C 1.38973 * 120.14989 * 359.97438 * 18 17 16 20 20 C 1.36040 * 121.15983 * 0.02562 * 19 18 17 21 21 C 1.40806 * 105.52321 * 359.74785 * 16 15 14 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46992 * 305.00351 * 11 9 7 24 24 H 1.08998 * 109.47097 * 64.99539 * 11 9 7 25 25 H 1.00898 * 110.99685 * 56.04556 * 12 11 9 26 26 H 1.00903 * 110.99628 * 179.97438 * 12 11 9 27 27 H 1.07997 * 120.12684 * 359.95508 * 17 16 15 28 28 H 1.08002 * 119.92460 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.42020 * 179.97438 * 19 18 17 30 30 H 1.08002 * 119.89415 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3710 -2.5800 -1.2494 12 7 -0.4522 -3.7952 -1.1906 13 6 2.2305 -3.6446 -0.0005 14 7 3.0816 -3.7913 -0.9550 15 16 4.0225 -5.1660 -0.6479 16 6 3.2357 -5.5967 0.8723 17 6 3.4197 -6.6244 1.7866 18 6 2.6304 -6.6906 2.9010 19 6 1.6476 -5.7324 3.1182 20 6 1.4485 -4.7158 2.2363 21 6 2.2490 -4.6134 1.0777 22 1 -0.4850 0.8400 0.0004 23 1 -0.2764 -1.7043 -1.2950 24 1 1.0024 -2.6115 -2.1374 25 1 -0.9994 -3.8205 -0.3433 26 1 -1.0432 -3.8714 -2.0049 27 1 4.1833 -7.3693 1.6183 28 1 2.7709 -7.4895 3.6140 29 1 1.0305 -5.7963 4.0022 30 1 0.6791 -3.9819 2.4257 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092472.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:13 Heat of formation + Delta-G solvation = 22.591386 kcal Electronic energy + Delta-G solvation = -15532.860389 eV Core-core repulsion = 13031.935360 eV Total energy + Delta-G solvation = -2500.925029 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80243 -38.23030 -35.91039 -34.16490 -32.05910 -31.26456 -30.49735 -26.25258 -24.91867 -23.79684 -22.74202 -20.52619 -19.39850 -18.46297 -17.05724 -16.91776 -16.49738 -16.02370 -15.73515 -15.35897 -15.05427 -14.94294 -14.35345 -13.93895 -13.49418 -13.05616 -12.93202 -12.89669 -12.64180 -12.49019 -12.15320 -11.94461 -11.60429 -11.39394 -11.02538 -10.63991 -10.57096 -9.80033 -9.41368 -8.71889 -8.18718 -6.33246 -0.28069 0.34164 0.64213 1.04975 1.37715 1.39041 1.43524 1.50583 2.38119 2.80132 3.06377 3.57421 3.74951 4.00584 4.13816 4.36571 4.48301 4.60293 4.68334 4.76290 4.96840 5.05997 5.19733 5.35659 5.41258 5.48865 5.56707 5.74806 5.94443 6.01219 6.15968 6.45150 6.62582 6.82369 7.32851 8.82934 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.007560 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.035323 B = 3702.783575 C = 3803.145953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.953 3.047 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.039 0.961 9 C 0.117 3.883 10 H 0.038 0.962 11 C 0.083 3.917 12 N -0.851 5.851 13 C 0.205 3.795 14 N -0.476 5.476 15 S 0.105 5.895 16 C -0.142 4.142 17 C -0.093 4.093 18 C -0.071 4.071 19 C -0.122 4.122 20 C -0.058 4.058 21 C -0.149 4.149 22 H 0.267 0.733 23 H 0.052 0.948 24 H 0.028 0.972 25 H 0.338 0.662 26 H 0.338 0.662 27 H 0.156 0.844 28 H 0.179 0.821 29 H 0.166 0.834 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 -12.198 7.052 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.058 0.942 9 C 0.093 3.907 10 H 0.056 0.944 11 C -0.049 4.049 12 N -0.380 5.380 13 C 0.017 3.983 14 N -0.285 5.285 15 S 0.259 5.741 16 C -0.262 4.262 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.142 4.142 20 C -0.080 4.080 21 C -0.161 4.161 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.196 0.804 29 H 0.183 0.817 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.153 -12.391 5.076 13.756 hybrid contribution -1.426 2.039 0.743 2.597 sum 1.727 -10.352 5.819 12.001 Atomic orbital electron populations 1.69913 1.06566 1.27800 1.50084 1.25548 0.95806 1.01775 0.94120 0.85685 0.78612 0.79240 0.78612 1.20558 1.19819 1.19681 1.21083 0.92439 0.90943 1.52226 0.94226 1.17641 0.90056 0.87624 0.95346 0.94413 1.21645 0.95554 0.90770 0.96931 1.58884 1.30208 1.41524 1.07389 1.23204 0.92796 0.94771 0.87560 1.75885 1.12072 1.13594 1.26969 1.84229 1.44402 1.26347 1.19096 1.23716 1.00699 1.00853 1.00943 1.20393 1.01680 0.96264 0.93275 1.21519 0.92911 0.98734 0.96137 1.21167 0.99371 0.93771 0.99885 1.20981 0.97093 0.98728 0.91242 1.20548 1.00758 0.96075 0.98711 0.92355 0.93045 0.95345 0.84992 0.85073 0.82684 0.80407 0.81658 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.35 11.29 21.45 0.24 -49.11 16 2 C 0.03 1.52 5.29 84.65 0.45 1.96 16 3 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.53 -29.69 8.45 25.60 0.22 -29.47 16 8 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 9 C 0.12 5.95 2.22 -12.29 -0.03 5.92 16 10 H 0.04 1.95 6.82 -2.39 -0.02 1.93 16 11 C 0.08 4.03 5.97 86.30 0.52 4.55 16 12 N -0.85 -33.89 9.34 -186.72 -1.74 -35.63 16 13 C 0.20 9.74 5.20 44.74 0.23 9.98 16 14 N -0.48 -23.36 11.47 -46.33 -0.53 -23.89 16 15 S 0.11 4.18 23.86 -56.49 -1.35 2.84 16 16 C -0.14 -5.05 6.71 23.03 0.15 -4.89 16 17 C -0.09 -2.35 10.02 22.04 0.22 -2.13 16 18 C -0.07 -1.39 10.01 22.09 0.22 -1.17 16 19 C -0.12 -2.75 9.92 21.93 0.22 -2.53 16 20 C -0.06 -1.88 9.70 22.49 0.22 -1.67 16 21 C -0.15 -5.98 6.05 -20.20 -0.12 -6.10 16 22 H 0.27 13.84 8.31 -92.71 -0.77 13.06 16 23 H 0.05 2.71 5.95 -2.39 -0.01 2.70 16 24 H 0.03 1.49 7.96 -2.39 -0.02 1.47 16 25 H 0.34 12.51 8.99 -89.70 -0.81 11.70 16 26 H 0.34 11.74 9.08 -89.69 -0.81 10.93 16 27 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 29 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.13 4.14 7.15 -2.91 -0.02 4.12 16 Total: -1.00 -65.80 272.54 0.51 -65.30 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.43 Total: 20.34 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 2.30 Total: -25.55 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -2.03 Total: -108.63 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.35 Total: 2.84 kcal Total: -65.80 0.51 -65.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092472.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.888 kcal (2) G-P(sol) polarization free energy of solvation -65.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds