Wall clock time and date at job start Mon Mar 30 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28734 * 121.08551 * 2 1 4 4 S 1.69393 * 108.98329 * 179.97438 * 3 2 1 5 5 C 1.76511 * 96.12097 * 0.02562 * 4 3 2 6 6 C 1.38792 * 133.55616 * 180.02562 * 5 4 3 7 7 C 1.36711 * 119.75376 * 179.97438 * 6 5 4 8 8 C 1.38975 * 120.15502 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.41984 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47087 * 199.99992 * 9 8 7 11 11 N 1.46905 * 109.47121 * 319.99795 * 9 8 7 12 12 C 1.50698 * 109.47079 * 79.99509 * 9 8 7 13 13 H 1.08003 * 120.00217 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00029 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99980 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00103 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47107 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46993 * 120.00297 * 16 14 12 19 19 H 1.48501 * 109.46889 * 240.00197 * 16 14 12 20 20 C 1.36039 * 121.15716 * 0.29296 * 8 7 6 21 21 C 1.40807 * 105.52095 * 359.97438 * 5 4 3 22 22 H 1.08998 * 109.47317 * 90.02455 * 1 2 3 23 23 H 1.09005 * 109.47591 * 210.02439 * 1 2 3 24 24 H 1.08998 * 109.47268 * 330.02281 * 1 2 3 25 25 H 1.07996 * 120.12047 * 359.94807 * 6 5 4 26 26 H 1.08000 * 119.92429 * 179.97438 * 7 6 5 27 27 H 1.00901 * 110.99869 * 60.00289 * 11 9 8 28 28 H 1.00896 * 110.99543 * 183.95412 * 11 9 8 29 29 H 0.96999 * 120.00171 * 179.97438 * 15 14 12 30 30 H 1.08004 * 119.89421 * 179.72711 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7473 0.0007 5 6 3.6439 -1.0082 0.0003 6 6 4.5446 -2.0641 0.0009 7 6 4.0819 -3.3506 0.0008 8 6 2.7148 -3.6008 0.0006 9 6 2.2230 -5.0252 0.0011 10 1 1.1917 -5.0537 -0.3506 11 7 3.0663 -5.8348 -0.8887 12 6 2.2921 -5.5800 1.4005 13 1 2.6553 -4.9627 2.2089 14 6 1.8905 -6.8754 1.6492 15 7 1.4476 -7.6270 0.6650 16 14 1.9754 -7.5629 3.3840 17 1 2.5049 -6.5235 4.3030 18 1 0.6154 -7.9656 3.8240 19 1 2.8728 -8.7459 3.4042 20 6 1.8129 -2.5824 -0.0055 21 6 2.2553 -1.2415 0.0002 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5135 25 1 5.6070 -1.8703 0.0011 26 1 4.7803 -4.1743 0.0009 27 1 4.0280 -5.8245 -0.5836 28 1 2.7183 -6.7794 -0.9559 29 1 1.1654 -8.5384 0.8398 30 1 0.7551 -2.8002 -0.0100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261097977.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:24 Heat of formation + Delta-G solvation = 36.474332 kcal Electronic energy + Delta-G solvation = -15234.710845 eV Core-core repulsion = 12734.387825 eV Total energy + Delta-G solvation = -2500.323019 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.64195 -36.98916 -34.48900 -31.71869 -30.67523 -29.42804 -29.06797 -26.04619 -23.39613 -22.79011 -20.95191 -19.37085 -17.81843 -16.63371 -15.78810 -15.41674 -15.00911 -14.59254 -14.38923 -13.63037 -13.38442 -13.07621 -12.89836 -12.57869 -12.23628 -11.81841 -11.64594 -11.22361 -11.16712 -10.94994 -10.86884 -10.51217 -10.29847 -10.10100 -9.73836 -9.26859 -8.76001 -8.41033 -7.52829 -7.26858 -6.20540 -4.38164 0.85875 1.71729 1.73251 2.08152 2.44735 3.14456 3.24134 3.28502 4.10773 4.28452 4.54897 4.88063 5.03240 5.29862 5.39830 5.53871 5.56654 5.74525 5.79189 5.97050 6.11393 6.33225 6.39914 6.43682 6.75632 6.91274 6.92941 7.28105 7.57149 7.63628 7.95116 8.53539 8.79880 8.98146 9.34554 10.76955 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031805 B = 0.005955 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.142211 B = 4700.418115 C = 4913.422148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.162 3.838 3 N -0.455 5.455 4 S 0.139 5.861 5 C -0.142 4.142 6 C -0.094 4.094 7 C -0.058 4.058 8 C -0.027 4.027 9 C 0.239 3.761 10 H 0.051 0.949 11 N -0.850 5.850 12 C -0.548 4.548 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.060 4.060 21 C -0.135 4.135 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.311 0.689 28 H 0.358 0.642 29 H 0.266 0.734 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 9.434 -1.411 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 N -0.268 5.268 4 S 0.293 5.707 5 C -0.262 4.262 6 C -0.117 4.117 7 C -0.080 4.080 8 C -0.029 4.029 9 C 0.129 3.871 10 H 0.068 0.932 11 N -0.380 5.380 12 C -0.587 4.587 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.083 4.083 21 C -0.146 4.146 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.143 0.857 26 H 0.151 0.849 27 H 0.121 0.879 28 H 0.174 0.826 29 H 0.076 0.924 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.189 11.984 -2.036 12.352 hybrid contribution -0.495 -2.639 1.905 3.292 sum 1.694 9.345 -0.131 9.498 Atomic orbital electron populations 1.20652 0.86550 1.04127 1.03770 1.22586 0.98280 0.87383 0.94559 1.75708 1.01321 1.26393 1.23365 1.84499 1.08486 0.97970 1.79754 1.23192 0.96772 0.98336 1.07901 1.19908 0.98095 0.90848 1.02824 1.20951 0.96209 0.95441 0.95418 1.20137 0.92596 0.97729 0.92440 1.18063 0.93766 0.83909 0.91343 0.93157 1.59548 1.04900 1.20025 1.53559 1.21834 1.44414 0.97907 0.94569 0.92411 1.25012 0.94057 0.96923 0.97485 1.69742 1.43058 1.08924 1.31304 0.86456 0.77909 0.78941 0.84261 1.19688 1.20762 1.20849 1.20518 1.00271 0.88620 0.98847 1.20123 0.91396 0.94578 1.08458 0.89610 0.89512 0.90272 0.85721 0.84949 0.87889 0.82569 0.92354 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.15 36.00 0.37 -0.68 16 2 C 0.16 2.55 6.88 -81.23 -0.56 2.00 16 3 N -0.46 -7.61 11.84 34.00 0.40 -7.20 16 4 S 0.14 2.23 23.86 -107.50 -2.56 -0.34 16 5 C -0.14 -2.46 6.71 -38.41 -0.26 -2.72 16 6 C -0.09 -1.54 10.02 -39.93 -0.40 -1.94 16 7 C -0.06 -1.04 9.22 -39.86 -0.37 -1.41 16 8 C -0.03 -0.53 4.85 -105.14 -0.51 -1.04 16 9 C 0.24 5.49 2.92 -70.01 -0.20 5.29 16 10 H 0.05 1.26 7.94 -51.93 -0.41 0.85 16 11 N -0.85 -18.75 9.01 -6.65 -0.06 -18.81 16 12 C -0.55 -13.77 8.70 -34.44 -0.30 -14.07 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.07 1.74 5.38 -17.82 -0.10 1.64 16 15 N -0.89 -23.28 11.54 55.43 0.64 -22.64 16 16 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.06 -1.09 9.31 -39.25 -0.37 -1.46 16 21 C -0.13 -2.36 6.04 -105.14 -0.64 -2.99 16 22 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.09 0.94 7.55 -51.93 -0.39 0.55 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 26 H 0.13 2.24 6.61 -52.49 -0.35 1.89 16 27 H 0.31 6.42 7.29 -39.29 -0.29 6.13 16 28 H 0.36 8.54 7.08 -39.29 -0.28 8.26 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.13 2.15 7.57 -52.48 -0.40 1.76 16 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -27.05 271.72 -8.76 -35.81 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -2.92 Total: 11.46 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -3.33 Total: -17.39 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.98 Total: -48.66 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.56 Total: -0.34 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.05 -8.76 -35.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097977.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.285 kcal (2) G-P(sol) polarization free energy of solvation -27.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds