Wall clock time and date at job start Mon Mar 30 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28734 * 121.08551 * 2 1 4 4 S 1.69393 * 108.98329 * 179.97438 * 3 2 1 5 5 C 1.76511 * 96.12097 * 0.02562 * 4 3 2 6 6 C 1.38792 * 133.55616 * 180.02562 * 5 4 3 7 7 C 1.36711 * 119.75376 * 179.97438 * 6 5 4 8 8 C 1.38975 * 120.15502 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.41984 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47087 * 199.99992 * 9 8 7 11 11 N 1.46905 * 109.47121 * 319.99795 * 9 8 7 12 12 C 1.50698 * 109.47079 * 79.99509 * 9 8 7 13 13 H 1.08003 * 120.00217 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00029 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99980 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00103 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47107 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46993 * 120.00297 * 16 14 12 19 19 H 1.48501 * 109.46889 * 240.00197 * 16 14 12 20 20 C 1.36039 * 121.15716 * 0.29296 * 8 7 6 21 21 C 1.40807 * 105.52095 * 359.97438 * 5 4 3 22 22 H 1.08998 * 109.47317 * 90.02455 * 1 2 3 23 23 H 1.09005 * 109.47591 * 210.02439 * 1 2 3 24 24 H 1.08998 * 109.47268 * 330.02281 * 1 2 3 25 25 H 1.07996 * 120.12047 * 359.94807 * 6 5 4 26 26 H 1.08000 * 119.92429 * 179.97438 * 7 6 5 27 27 H 1.00901 * 110.99869 * 60.00289 * 11 9 8 28 28 H 1.00896 * 110.99543 * 183.95412 * 11 9 8 29 29 H 0.96999 * 120.00171 * 179.97438 * 15 14 12 30 30 H 1.08004 * 119.89421 * 179.72711 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7473 0.0007 5 6 3.6439 -1.0082 0.0003 6 6 4.5446 -2.0641 0.0009 7 6 4.0819 -3.3506 0.0008 8 6 2.7148 -3.6008 0.0006 9 6 2.2230 -5.0252 0.0011 10 1 1.1917 -5.0537 -0.3506 11 7 3.0663 -5.8348 -0.8887 12 6 2.2921 -5.5800 1.4005 13 1 2.6553 -4.9627 2.2089 14 6 1.8905 -6.8754 1.6492 15 7 1.4476 -7.6270 0.6650 16 14 1.9754 -7.5629 3.3840 17 1 2.5049 -6.5235 4.3030 18 1 0.6154 -7.9656 3.8240 19 1 2.8728 -8.7459 3.4042 20 6 1.8129 -2.5824 -0.0055 21 6 2.2553 -1.2415 0.0002 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5135 25 1 5.6070 -1.8703 0.0011 26 1 4.7803 -4.1743 0.0009 27 1 4.0280 -5.8245 -0.5836 28 1 2.7183 -6.7794 -0.9559 29 1 1.1654 -8.5384 0.8398 30 1 0.7551 -2.8002 -0.0100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097977.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:24 Heat of formation + Delta-G solvation = 20.506494 kcal Electronic energy + Delta-G solvation = -15235.403262 eV Core-core repulsion = 12734.387825 eV Total energy + Delta-G solvation = -2501.015437 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99232 -38.37854 -36.17294 -33.50431 -32.06590 -30.80667 -30.24830 -27.91699 -24.93403 -24.22215 -22.38032 -20.71749 -19.18113 -18.53681 -17.19998 -16.99040 -16.54095 -16.02869 -15.79417 -14.90205 -14.85618 -14.69245 -14.39317 -13.78148 -13.51878 -13.27552 -13.13319 -12.85713 -12.70806 -12.53707 -12.44076 -12.01293 -11.90522 -11.58614 -11.36066 -10.75661 -10.56482 -9.80801 -9.21082 -8.74560 -8.10966 -6.37331 -0.46706 0.31844 0.44033 0.83049 1.16430 1.37218 1.42311 1.51603 2.36503 2.75563 3.06311 3.30762 3.61533 3.99941 4.22226 4.37588 4.44558 4.55594 4.58391 4.70289 4.72044 4.94663 5.01495 5.18565 5.24420 5.39077 5.60011 5.66239 5.82855 5.93020 6.09237 6.64533 6.92884 7.13452 7.39593 8.82443 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031805 B = 0.005955 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.142211 B = 4700.418115 C = 4913.422148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.162 3.838 3 N -0.472 5.472 4 S 0.159 5.841 5 C -0.156 4.156 6 C -0.086 4.086 7 C -0.065 4.065 8 C -0.050 4.050 9 C 0.245 3.755 10 H 0.021 0.979 11 N -0.843 5.843 12 C -0.557 4.557 13 H 0.048 0.952 14 C 0.027 3.973 15 N -0.913 5.913 16 Si 0.954 3.046 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.278 1.278 20 C -0.062 4.062 21 C -0.145 4.145 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.140 0.860 27 H 0.320 0.680 28 H 0.347 0.653 29 H 0.268 0.732 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 10.393 -0.980 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 N -0.285 5.285 4 S 0.313 5.687 5 C -0.275 4.275 6 C -0.108 4.108 7 C -0.088 4.088 8 C -0.053 4.053 9 C 0.134 3.866 10 H 0.039 0.961 11 N -0.372 5.372 12 C -0.597 4.597 13 H 0.066 0.934 14 C -0.173 4.173 15 N -0.553 5.553 16 Si 0.780 3.220 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.204 1.204 20 C -0.085 4.085 21 C -0.156 4.156 22 H 0.122 0.878 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.174 0.826 26 H 0.157 0.843 27 H 0.131 0.869 28 H 0.162 0.838 29 H 0.077 0.923 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.562 12.962 -1.607 13.311 hybrid contribution -0.608 -2.856 1.742 3.400 sum 1.954 10.106 0.135 10.294 Atomic orbital electron populations 1.20822 0.83865 1.05202 1.05229 1.23001 0.99998 0.86370 0.93336 1.75718 1.01743 1.26763 1.24249 1.84394 1.08316 0.96457 1.79520 1.23548 0.97070 0.99553 1.07346 1.20185 0.99620 0.89843 1.01201 1.21025 0.95438 0.96557 0.95774 1.19956 0.93957 0.96335 0.95050 1.17845 0.92579 0.85944 0.90196 0.96132 1.59507 1.05279 1.19107 1.53328 1.22032 1.44208 0.98040 0.95406 0.93394 1.25650 0.93916 0.97282 1.00489 1.69829 1.43609 1.09137 1.32684 0.85572 0.77742 0.78168 0.80505 1.19858 1.20680 1.20402 1.20571 1.00525 0.88883 0.98533 1.20318 0.91989 0.94760 1.08523 0.87817 0.88751 0.88857 0.82598 0.84272 0.86943 0.83815 0.92257 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 10.15 71.23 0.72 -1.18 16 2 C 0.16 4.84 6.88 44.73 0.31 5.14 16 3 N -0.47 -14.85 11.84 -46.34 -0.55 -15.40 16 4 S 0.16 4.77 23.86 -56.49 -1.35 3.43 16 5 C -0.16 -5.11 6.71 23.03 0.15 -4.95 16 6 C -0.09 -2.65 10.02 22.04 0.22 -2.43 16 7 C -0.07 -2.29 9.22 22.09 0.20 -2.09 16 8 C -0.05 -2.01 4.85 -20.20 -0.10 -2.11 16 9 C 0.24 11.39 2.92 43.42 0.13 11.52 16 10 H 0.02 1.07 7.94 -2.39 -0.02 1.05 16 11 N -0.84 -37.48 9.01 -174.94 -1.58 -39.05 16 12 C -0.56 -28.21 8.70 25.60 0.22 -27.99 16 13 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 14 C 0.03 1.39 5.38 84.65 0.46 1.85 16 15 N -0.91 -47.97 11.54 21.45 0.25 -47.73 16 16 Si 0.95 40.97 29.54 68.60 2.03 42.99 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.06 -2.26 9.31 22.48 0.21 -2.05 16 21 C -0.14 -4.88 6.04 -20.20 -0.12 -5.00 16 22 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.09 1.86 7.55 -2.38 -0.02 1.84 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 26 H 0.14 4.57 6.61 -2.91 -0.02 4.55 16 27 H 0.32 13.16 7.29 -89.69 -0.65 12.51 16 28 H 0.35 16.79 7.08 -89.70 -0.63 16.15 16 29 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.14 4.55 7.57 -2.91 -0.02 4.53 16 Total: -1.00 -56.43 271.72 1.10 -55.33 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.10 Total: 29.72 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 2.40 Total: -29.29 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -1.88 Total: -102.18 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.35 Total: 3.43 kcal Total: -56.43 1.10 -55.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097977.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.836 kcal (2) G-P(sol) polarization free energy of solvation -56.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds