Wall clock time and date at job start Mon Mar 30 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28734 * 121.08333 * 2 1 4 4 S 1.69396 * 108.98470 * 180.02562 * 3 2 1 5 5 C 1.76515 * 96.11781 * 359.97438 * 4 3 2 6 6 C 1.38783 * 133.55331 * 179.97438 * 5 4 3 7 7 C 1.36717 * 119.75836 * 179.71802 * 6 5 4 8 8 C 1.38973 * 120.14686 * 0.59679 * 7 6 5 9 9 C 1.50698 * 119.41729 * 179.71852 * 8 7 6 10 10 H 1.09009 * 109.47290 * 159.72568 * 9 8 7 11 11 N 1.46902 * 109.47231 * 39.72781 * 9 8 7 12 12 C 1.50702 * 109.47465 * 279.72197 * 9 8 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 C 1.36040 * 121.16064 * 359.43572 * 8 7 6 21 21 C 1.40804 * 105.52188 * 0.02562 * 5 4 3 22 22 H 1.09001 * 109.47628 * 269.97920 * 1 2 3 23 23 H 1.08998 * 109.47229 * 29.98120 * 1 2 3 24 24 H 1.08998 * 109.47121 * 149.97869 * 1 2 3 25 25 H 1.08003 * 120.12287 * 0.07725 * 6 5 4 26 26 H 1.08000 * 119.92494 * 180.28968 * 7 6 5 27 27 H 1.00902 * 110.99590 * 299.99265 * 11 9 8 28 28 H 1.00896 * 111.00313 * 63.95111 * 11 9 8 29 29 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 30 30 H 1.08004 * 119.89176 * 180.23313 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7475 -0.0007 5 6 3.6440 -1.0081 -0.0003 6 6 4.5447 -2.0639 -0.0009 7 6 4.0821 -3.3505 0.0055 8 6 2.7151 -3.6007 0.0002 9 6 2.2234 -5.0252 0.0011 10 1 1.1920 -5.0534 0.3529 11 7 3.0667 -5.8339 0.8915 12 6 2.2922 -5.5813 -1.3979 13 1 2.6561 -4.9649 -2.2067 14 6 1.8907 -6.8768 -1.6453 15 7 1.4480 -7.6276 -0.6604 16 14 1.9689 -7.5636 -3.3808 17 1 0.6874 -7.2901 -4.0795 18 1 3.0831 -6.9168 -4.1193 19 1 2.1982 -9.0296 -3.3231 20 6 1.8131 -2.5824 0.0001 21 6 2.2554 -1.2415 -0.0002 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 5.6071 -1.8700 -0.0007 26 1 4.7806 -4.1741 0.0098 27 1 4.0284 -5.8238 0.5863 28 1 2.9874 -5.5209 1.8474 29 1 1.4078 -7.2711 0.2408 30 1 0.7553 -2.8003 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261097978.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:27 Heat of formation + Delta-G solvation = 39.223259 kcal Electronic energy + Delta-G solvation = -15271.966769 eV Core-core repulsion = 12771.762952 eV Total energy + Delta-G solvation = -2500.203817 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81975 -37.19761 -34.63611 -31.62177 -30.85430 -29.54562 -29.19726 -25.70811 -23.41335 -22.71753 -21.15531 -19.59863 -18.05367 -16.87783 -15.91021 -15.45904 -14.95515 -14.70451 -14.15229 -13.77897 -13.69111 -13.53605 -12.94562 -12.65670 -12.31251 -12.07476 -11.73702 -11.37090 -11.21470 -10.77994 -10.73336 -10.40761 -10.27610 -10.10287 -9.55304 -8.90104 -8.47558 -8.38752 -7.68232 -7.50479 -6.26603 -4.11463 0.70092 1.53626 1.59715 1.95535 2.29424 3.43196 3.46166 3.62019 3.94296 4.41671 4.54363 4.74018 5.17242 5.27635 5.33823 5.40779 5.46221 5.57673 5.63697 5.81819 5.92599 6.01859 6.16270 6.24924 6.52288 6.66424 6.78231 7.11236 7.17805 7.84760 8.17322 8.54391 8.63856 8.95944 9.72390 11.13247 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.005991 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.503101 B = 4672.753479 C = 4880.936873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.161 3.839 3 N -0.453 5.453 4 S 0.146 5.854 5 C -0.143 4.143 6 C -0.089 4.089 7 C -0.071 4.071 8 C -0.070 4.070 9 C 0.238 3.762 10 H 0.041 0.959 11 N -0.829 5.829 12 C -0.612 4.612 13 H 0.048 0.952 14 C 0.040 3.960 15 N -0.888 5.888 16 Si 1.065 2.935 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.056 4.056 21 C -0.133 4.133 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.327 0.673 28 H 0.304 0.696 29 H 0.290 0.710 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 11.614 2.557 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 N -0.265 5.265 4 S 0.299 5.701 5 C -0.263 4.263 6 C -0.112 4.112 7 C -0.094 4.094 8 C -0.074 4.074 9 C 0.129 3.871 10 H 0.059 0.941 11 N -0.357 5.357 12 C -0.650 4.650 13 H 0.066 0.934 14 C -0.170 4.170 15 N -0.522 5.522 16 Si 0.894 3.106 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.210 1.210 20 C -0.079 4.079 21 C -0.144 4.144 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.140 0.860 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.128 11.845 1.450 12.122 hybrid contribution 0.241 0.795 0.990 1.292 sum 2.369 12.640 2.440 13.090 Atomic orbital electron populations 1.20662 0.86417 1.04264 1.03792 1.22601 0.98364 0.87299 0.94613 1.75718 1.01335 1.26364 1.23108 1.84547 1.08435 0.97595 1.79479 1.23229 0.96771 0.98580 1.07707 1.19901 0.98192 0.90775 1.02318 1.20964 0.96094 0.95717 0.96597 1.21172 0.92905 0.99854 0.93516 1.18440 0.92865 0.81393 0.94447 0.94085 1.59438 1.13136 1.59543 1.03571 1.21684 1.51245 1.00928 0.91165 0.93416 1.25618 0.92965 0.93477 1.04937 1.70537 1.39510 1.39134 1.03013 0.83615 0.76294 0.76123 0.74532 1.21571 1.21684 1.21041 1.20585 1.00320 0.88628 0.98362 1.20198 0.91429 0.94695 1.08090 0.89593 0.90120 0.89485 0.85580 0.85066 0.85991 0.88577 0.89694 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 10.16 36.00 0.37 -0.65 16 2 C 0.16 2.47 6.88 -81.23 -0.56 1.91 16 3 N -0.45 -7.36 11.84 34.00 0.40 -6.96 16 4 S 0.15 2.26 23.86 -107.50 -2.56 -0.31 16 5 C -0.14 -2.40 6.71 -38.41 -0.26 -2.66 16 6 C -0.09 -1.41 10.02 -39.93 -0.40 -1.81 16 7 C -0.07 -1.24 9.22 -39.86 -0.37 -1.60 16 8 C -0.07 -1.35 4.84 -105.14 -0.51 -1.86 16 9 C 0.24 5.36 2.44 -70.02 -0.17 5.19 16 10 H 0.04 1.00 7.81 -51.92 -0.41 0.59 16 11 N -0.83 -17.40 7.60 -6.65 -0.05 -17.45 16 12 C -0.61 -16.00 8.70 -34.44 -0.30 -16.30 16 13 H 0.05 1.28 7.74 -52.49 -0.41 0.88 16 14 C 0.04 1.10 5.39 -17.82 -0.10 1.00 16 15 N -0.89 -25.61 13.51 55.43 0.75 -24.87 16 16 Si 1.07 24.39 29.90 -169.99 -5.08 19.31 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 C -0.06 -1.00 9.31 -39.25 -0.37 -1.36 16 21 C -0.13 -2.26 6.04 -105.14 -0.64 -2.90 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 0.92 7.54 -51.93 -0.39 0.53 16 25 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 26 H 0.13 2.14 6.60 -52.49 -0.35 1.79 16 27 H 0.33 6.53 7.28 -39.29 -0.29 6.24 16 28 H 0.30 5.58 9.06 -39.29 -0.36 5.22 16 29 H 0.29 8.32 6.39 -40.82 -0.26 8.06 16 30 H 0.13 2.11 7.56 -52.48 -0.40 1.72 16 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -29.68 272.08 -8.66 -38.33 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -2.91 Total: 8.88 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -3.29 Total: -21.04 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 1.10 Total: -49.27 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.56 Total: -0.31 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.68 -8.66 -38.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097978.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.555 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds