Wall clock time and date at job start Mon Mar 30 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28734 * 121.08333 * 2 1 4 4 S 1.69396 * 108.98470 * 180.02562 * 3 2 1 5 5 C 1.76515 * 96.11781 * 359.97438 * 4 3 2 6 6 C 1.38783 * 133.55331 * 179.97438 * 5 4 3 7 7 C 1.36717 * 119.75836 * 179.71802 * 6 5 4 8 8 C 1.38973 * 120.14686 * 0.59679 * 7 6 5 9 9 C 1.50698 * 119.41729 * 179.71852 * 8 7 6 10 10 H 1.09009 * 109.47290 * 159.72568 * 9 8 7 11 11 N 1.46902 * 109.47231 * 39.72781 * 9 8 7 12 12 C 1.50702 * 109.47465 * 279.72197 * 9 8 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 C 1.36040 * 121.16064 * 359.43572 * 8 7 6 21 21 C 1.40804 * 105.52188 * 0.02562 * 5 4 3 22 22 H 1.09001 * 109.47628 * 269.97920 * 1 2 3 23 23 H 1.08998 * 109.47229 * 29.98120 * 1 2 3 24 24 H 1.08998 * 109.47121 * 149.97869 * 1 2 3 25 25 H 1.08003 * 120.12287 * 0.07725 * 6 5 4 26 26 H 1.08000 * 119.92494 * 180.28968 * 7 6 5 27 27 H 1.00902 * 110.99590 * 299.99265 * 11 9 8 28 28 H 1.00896 * 111.00313 * 63.95111 * 11 9 8 29 29 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 30 30 H 1.08004 * 119.89176 * 180.23313 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7475 -0.0007 5 6 3.6440 -1.0081 -0.0003 6 6 4.5447 -2.0639 -0.0009 7 6 4.0821 -3.3505 0.0055 8 6 2.7151 -3.6007 0.0002 9 6 2.2234 -5.0252 0.0011 10 1 1.1920 -5.0534 0.3529 11 7 3.0667 -5.8339 0.8915 12 6 2.2922 -5.5813 -1.3979 13 1 2.6561 -4.9649 -2.2067 14 6 1.8907 -6.8768 -1.6453 15 7 1.4480 -7.6276 -0.6604 16 14 1.9689 -7.5636 -3.3808 17 1 0.6874 -7.2901 -4.0795 18 1 3.0831 -6.9168 -4.1193 19 1 2.1982 -9.0296 -3.3231 20 6 1.8131 -2.5824 0.0001 21 6 2.2554 -1.2415 -0.0002 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 5.6071 -1.8700 -0.0007 26 1 4.7806 -4.1741 0.0098 27 1 4.0284 -5.8238 0.5863 28 1 2.9874 -5.5209 1.8474 29 1 1.4078 -7.2711 0.2408 30 1 0.7553 -2.8003 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097978.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:27 Heat of formation + Delta-G solvation = 20.773604 kcal Electronic energy + Delta-G solvation = -15272.766806 eV Core-core repulsion = 12771.762952 eV Total energy + Delta-G solvation = -2501.003854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13940 -38.56265 -36.28627 -33.47309 -32.20630 -30.88741 -30.33032 -27.58378 -24.90106 -24.21661 -22.60674 -20.91641 -19.42702 -18.71059 -17.24485 -17.00402 -16.36157 -15.87457 -15.83160 -15.44180 -15.04647 -14.88865 -14.39294 -13.90482 -13.76424 -13.39458 -13.04925 -12.70882 -12.66061 -12.56689 -12.34570 -11.91781 -11.74999 -11.62875 -11.05399 -10.54351 -10.42692 -9.93154 -9.33851 -8.82487 -8.35297 -6.22994 -0.58743 0.17704 0.34286 0.74264 1.05230 1.58767 1.65509 1.82864 2.54385 2.68715 3.20336 3.34171 3.50656 3.88909 4.11267 4.17978 4.29306 4.34695 4.46075 4.48368 4.63828 4.80569 4.89841 5.07192 5.10898 5.17295 5.51560 5.65135 5.73958 5.94607 6.23816 6.68980 6.81059 7.06233 7.67484 9.01214 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.005991 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.503101 B = 4672.753479 C = 4880.936873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.162 3.838 3 N -0.470 5.470 4 S 0.166 5.834 5 C -0.155 4.155 6 C -0.081 4.081 7 C -0.076 4.076 8 C -0.091 4.091 9 C 0.244 3.756 10 H 0.016 0.984 11 N -0.837 5.837 12 C -0.616 4.616 13 H 0.036 0.964 14 C -0.006 4.006 15 N -0.918 5.918 16 Si 1.107 2.893 17 H -0.278 1.278 18 H -0.278 1.278 19 H -0.287 1.287 20 C -0.059 4.059 21 C -0.143 4.143 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.139 0.861 27 H 0.333 0.667 28 H 0.320 0.680 29 H 0.281 0.719 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 12.861 2.199 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 N -0.283 5.283 4 S 0.320 5.680 5 C -0.275 4.275 6 C -0.104 4.104 7 C -0.099 4.099 8 C -0.095 4.095 9 C 0.134 3.866 10 H 0.034 0.966 11 N -0.366 5.366 12 C -0.654 4.654 13 H 0.054 0.946 14 C -0.210 4.210 15 N -0.554 5.554 16 Si 0.931 3.069 17 H -0.204 1.204 18 H -0.204 1.204 19 H -0.213 1.213 20 C -0.081 4.081 21 C -0.154 4.154 22 H 0.123 0.877 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.175 0.825 26 H 0.156 0.844 27 H 0.147 0.853 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.592 13.121 1.099 13.420 hybrid contribution 0.116 0.535 1.147 1.271 sum 2.708 13.657 2.246 14.103 Atomic orbital electron populations 1.20828 0.83799 1.05240 1.05283 1.23011 1.00043 0.86318 0.93409 1.75727 1.01779 1.26743 1.24006 1.84449 1.08237 0.96129 1.79202 1.23583 0.97052 0.99770 1.07110 1.20182 0.99690 0.89798 1.00738 1.21027 0.95296 0.96768 0.96792 1.20877 0.94194 0.98259 0.96152 1.18086 0.92040 0.83587 0.92881 0.96585 1.59189 1.13274 1.59751 1.04355 1.21965 1.50009 1.00686 0.92756 0.94565 1.26804 0.92449 0.94351 1.07411 1.70645 1.41970 1.39722 1.03039 0.83056 0.77088 0.75440 0.71308 1.20420 1.20391 1.21267 1.20627 1.00527 0.88918 0.98063 1.20381 0.92011 0.94855 1.08200 0.87713 0.88776 0.88841 0.82510 0.84378 0.85334 0.86837 0.90761 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 10.16 71.23 0.72 -1.11 16 2 C 0.16 4.65 6.88 44.73 0.31 4.96 16 3 N -0.47 -14.32 11.84 -46.33 -0.55 -14.87 16 4 S 0.17 4.79 23.86 -56.49 -1.35 3.44 16 5 C -0.16 -4.91 6.71 23.03 0.15 -4.75 16 6 C -0.08 -2.41 10.02 22.04 0.22 -2.19 16 7 C -0.08 -2.55 9.22 22.09 0.20 -2.35 16 8 C -0.09 -3.46 4.84 -20.20 -0.10 -3.56 16 9 C 0.24 11.11 2.44 43.42 0.11 11.21 16 10 H 0.02 0.81 7.81 -2.38 -0.02 0.79 16 11 N -0.84 -35.21 7.60 -174.94 -1.33 -36.54 16 12 C -0.62 -32.38 8.70 25.60 0.22 -32.16 16 13 H 0.04 1.95 7.74 -2.91 -0.02 1.92 16 14 C -0.01 -0.31 5.39 84.65 0.46 0.14 16 15 N -0.92 -53.59 13.51 21.45 0.29 -53.30 16 16 Si 1.11 48.97 29.90 68.60 2.05 51.02 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 C -0.06 -2.05 9.31 22.49 0.21 -1.84 16 21 C -0.14 -4.65 6.04 -20.20 -0.12 -4.77 16 22 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.09 1.79 7.54 -2.39 -0.02 1.78 16 25 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 26 H 0.14 4.33 6.60 -2.91 -0.02 4.31 16 27 H 0.33 13.21 7.28 -89.69 -0.65 12.55 16 28 H 0.32 11.71 9.06 -89.70 -0.81 10.90 16 29 H 0.28 16.42 6.39 -92.70 -0.59 15.83 16 30 H 0.14 4.40 7.56 -2.91 -0.02 4.38 16 Total: -1.00 -62.59 272.08 1.40 -61.19 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.10 Total: 25.47 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: 2.38 Total: -36.41 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -1.59 Total: -104.72 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.05 Total: 51.02 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.35 Total: 3.44 kcal Total: -62.59 1.40 -61.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097978.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.964 kcal (2) G-P(sol) polarization free energy of solvation -62.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds