Wall clock time and date at job start Mon Mar 30 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47192 * 54.99616 * 10 9 7 12 12 N 1.46896 * 109.46919 * 294.99564 * 10 9 7 13 13 C 1.50695 * 109.46942 * 174.99721 * 10 9 7 14 14 C 1.36756 * 120.12201 * 100.00334 * 13 10 9 15 15 C 1.38930 * 120.15282 * 179.97438 * 14 13 10 16 16 C 1.36077 * 121.15980 * 0.02562 * 15 14 13 17 17 C 1.41158 * 120.20961 * 0.02660 * 16 15 14 18 18 C 1.44962 * 130.66699 * 179.97438 * 17 16 15 19 19 N 1.28744 * 117.82921 * 179.10842 * 18 17 16 20 20 S 1.69388 * 108.98903 * 0.78419 * 19 18 17 21 21 C 1.38748 * 120.12501 * 279.71785 * 13 10 9 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.00899 * 110.99894 * 176.04490 * 12 10 9 26 26 H 1.00900 * 111.00679 * 300.00301 * 12 10 9 27 27 H 1.08002 * 119.92355 * 359.97248 * 14 13 10 28 28 H 1.08004 * 119.41992 * 179.97438 * 15 14 13 29 29 H 1.08005 * 119.89750 * 179.97438 * 16 15 14 30 30 H 1.08000 * 121.08533 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9287 -3.5556 0.8409 12 7 3.0092 -3.6534 -1.2561 13 6 1.4957 -4.9636 0.1213 14 6 1.2558 -5.7248 -0.9892 15 6 0.5653 -6.9251 -0.8768 16 6 0.1150 -7.3681 0.3285 17 6 0.3439 -6.6075 1.4954 18 6 -0.0283 -6.8574 2.8740 19 7 0.3271 -5.9923 3.7588 20 16 1.1588 -4.7307 2.9932 21 6 1.0516 -5.3971 1.3622 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 3.7169 -4.3725 -1.2535 26 1 2.3975 -3.7508 -2.0527 27 1 1.6039 -5.3920 -1.9560 28 1 0.3820 -7.5167 -1.7616 29 1 -0.4199 -8.3042 0.3924 30 1 -0.5734 -7.7473 3.1519 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261099420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:28 Heat of formation + Delta-G solvation = 45.773994 kcal Electronic energy + Delta-G solvation = -15281.359053 eV Core-core repulsion = 12781.439297 eV Total energy + Delta-G solvation = -2499.919756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87180 -37.04184 -34.99518 -32.48529 -30.64315 -29.86214 -28.31188 -24.65080 -24.18405 -22.44211 -21.30295 -19.88662 -17.83542 -16.35139 -16.00804 -15.75168 -15.17127 -15.07289 -14.36630 -14.15175 -13.84777 -13.66493 -12.89111 -12.35629 -11.99683 -11.87677 -11.54488 -11.15316 -10.94059 -10.77945 -10.53867 -10.39289 -10.20976 -9.80698 -9.30324 -9.09081 -8.74894 -8.31023 -8.09752 -7.61342 -5.92316 -3.91578 0.63486 1.32278 1.66186 2.08134 2.28140 3.37607 3.44922 3.50558 3.71984 4.45466 4.53162 4.67541 4.96415 5.11895 5.26141 5.35870 5.45943 5.56900 5.62283 5.93573 6.01673 6.13231 6.34536 6.46766 6.62272 6.74146 6.89986 7.47384 7.63856 7.88817 8.04632 8.08797 8.48558 9.14303 9.70685 11.19387 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.006956 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.971634 B = 4024.121321 C = 4641.206139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.052 3.948 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.128 3.872 11 H 0.082 0.918 12 N -0.819 5.819 13 C -0.055 4.055 14 C -0.101 4.101 15 C -0.117 4.117 16 C -0.070 4.070 17 C -0.140 4.140 18 C 0.120 3.880 19 N -0.453 5.453 20 S 0.219 5.781 21 C -0.126 4.126 22 H 0.258 0.742 23 H 0.023 0.977 24 H 0.017 0.983 25 H 0.324 0.676 26 H 0.336 0.664 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -15.930 -0.149 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.533 4.533 8 H 0.082 0.918 9 C 0.001 3.999 10 C 0.016 3.984 11 H 0.100 0.900 12 N -0.347 5.347 13 C -0.062 4.062 14 C -0.124 4.124 15 C -0.137 4.137 16 C -0.092 4.092 17 C -0.153 4.153 18 C -0.090 4.090 19 N -0.264 5.264 20 S 0.373 5.627 21 C -0.247 4.247 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.136 0.864 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.430 -13.704 2.006 13.923 hybrid contribution -0.592 -1.205 -1.540 2.043 sum 0.838 -14.908 0.466 14.939 Atomic orbital electron populations 1.69986 1.06019 1.26316 1.51763 1.25015 0.94807 0.99211 0.95795 0.86521 0.80221 0.83849 0.77320 1.19681 1.21250 1.21282 1.21148 0.93405 0.89852 1.48913 0.91808 1.19138 0.92739 0.90507 0.97555 1.20925 0.94930 0.89908 0.92648 0.90014 1.58766 1.17724 1.54389 1.03823 1.20394 0.97663 0.98281 0.89875 1.20874 0.98835 0.94462 0.98218 1.20668 0.98882 0.96731 0.97435 1.20492 0.99384 0.98897 0.90448 1.20463 1.03660 0.96561 0.94585 1.23772 0.98268 0.99081 0.87880 1.75735 1.15769 1.05600 1.29266 1.85331 1.58059 1.25819 0.93492 1.23358 1.03427 0.98195 0.99743 0.93253 0.95890 0.96450 0.86437 0.84939 0.85208 0.85499 0.85441 0.80052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.49 -13.86 8.84 -34.44 -0.30 -14.16 16 8 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 9 C 0.04 0.96 4.60 -27.88 -0.13 0.83 16 10 C 0.13 2.55 2.85 -68.87 -0.20 2.35 16 11 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 12 N -0.82 -14.35 8.42 -5.66 -0.05 -14.40 16 13 C -0.06 -0.96 5.05 -104.97 -0.53 -1.49 16 14 C -0.10 -1.43 9.22 -39.86 -0.37 -1.79 16 15 C -0.12 -1.39 9.92 -40.10 -0.40 -1.79 16 16 C -0.07 -0.83 10.07 -39.25 -0.40 -1.22 16 17 C -0.14 -2.05 6.12 -105.14 -0.64 -2.69 16 18 C 0.12 1.62 11.46 -16.19 -0.19 1.44 16 19 N -0.45 -7.36 11.90 30.97 0.37 -6.99 16 20 S 0.22 3.93 23.76 -107.50 -2.55 1.37 16 21 C -0.13 -2.19 6.45 -38.41 -0.25 -2.44 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.32 4.67 9.06 -39.29 -0.36 4.32 16 26 H 0.34 5.48 7.29 -39.29 -0.29 5.19 16 27 H 0.13 1.60 6.22 -52.49 -0.33 1.28 16 28 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 30 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -32.14 275.47 -8.91 -41.05 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.05 Total: 3.79 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -3.49 Total: -19.57 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 1.06 Total: -47.86 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.55 Total: 1.37 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.14 -8.91 -41.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261099420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.822 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds