Wall clock time and date at job start Mon Mar 30 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47192 * 54.99616 * 10 9 7 12 12 N 1.46896 * 109.46919 * 294.99564 * 10 9 7 13 13 C 1.50695 * 109.46942 * 174.99721 * 10 9 7 14 14 C 1.36756 * 120.12201 * 100.00334 * 13 10 9 15 15 C 1.38930 * 120.15282 * 179.97438 * 14 13 10 16 16 C 1.36077 * 121.15980 * 0.02562 * 15 14 13 17 17 C 1.41158 * 120.20961 * 0.02660 * 16 15 14 18 18 C 1.44962 * 130.66699 * 179.97438 * 17 16 15 19 19 N 1.28744 * 117.82921 * 179.10842 * 18 17 16 20 20 S 1.69388 * 108.98903 * 0.78419 * 19 18 17 21 21 C 1.38748 * 120.12501 * 279.71785 * 13 10 9 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.00899 * 110.99894 * 176.04490 * 12 10 9 26 26 H 1.00900 * 111.00679 * 300.00301 * 12 10 9 27 27 H 1.08002 * 119.92355 * 359.97248 * 14 13 10 28 28 H 1.08004 * 119.41992 * 179.97438 * 15 14 13 29 29 H 1.08005 * 119.89750 * 179.97438 * 16 15 14 30 30 H 1.08000 * 121.08533 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9287 -3.5556 0.8409 12 7 3.0092 -3.6534 -1.2561 13 6 1.4957 -4.9636 0.1213 14 6 1.2558 -5.7248 -0.9892 15 6 0.5653 -6.9251 -0.8768 16 6 0.1150 -7.3681 0.3285 17 6 0.3439 -6.6075 1.4954 18 6 -0.0283 -6.8574 2.8740 19 7 0.3271 -5.9923 3.7588 20 16 1.1588 -4.7307 2.9932 21 6 1.0516 -5.3971 1.3622 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 3.7169 -4.3725 -1.2535 26 1 2.3975 -3.7508 -2.0527 27 1 1.6039 -5.3920 -1.9560 28 1 0.3820 -7.5167 -1.7616 29 1 -0.4199 -8.3042 0.3924 30 1 -0.5734 -7.7473 3.1519 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261099420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:28 Heat of formation + Delta-G solvation = 23.622677 kcal Electronic energy + Delta-G solvation = -15282.319606 eV Core-core repulsion = 12781.439297 eV Total energy + Delta-G solvation = -2500.880309 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02207 -38.33627 -36.39005 -34.55001 -31.80148 -31.08171 -30.20246 -26.39349 -25.32620 -23.97208 -22.50867 -21.35467 -19.13032 -18.33482 -17.22307 -17.04745 -16.69970 -16.29606 -16.19318 -15.37231 -15.07921 -14.82553 -14.44170 -14.21585 -13.34526 -13.19322 -13.11187 -12.76539 -12.63436 -12.45678 -12.27816 -11.94591 -11.54582 -11.44395 -11.21242 -10.68863 -10.51862 -9.92166 -9.51956 -8.89571 -8.13983 -6.20566 -0.47194 0.22438 0.43188 0.90108 1.18750 1.40457 1.41126 1.54869 2.44758 2.64735 3.19220 3.40421 3.55352 3.80614 3.95965 4.17895 4.33224 4.41355 4.54061 4.61599 4.79990 4.96338 5.03043 5.28767 5.38867 5.45282 5.55530 5.63674 5.83456 5.86221 6.25357 6.43937 6.78819 6.92967 7.46102 8.97942 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.006956 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.971634 B = 4024.121321 C = 4641.206139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.507 4.507 8 H 0.060 0.940 9 C 0.050 3.950 10 C 0.146 3.854 11 H 0.061 0.939 12 N -0.826 5.826 13 C -0.090 4.090 14 C -0.092 4.092 15 C -0.114 4.114 16 C -0.047 4.047 17 C -0.153 4.153 18 C 0.141 3.859 19 N -0.470 5.470 20 S 0.128 5.872 21 C -0.143 4.143 22 H 0.260 0.740 23 H -0.010 1.010 24 H -0.008 1.008 25 H 0.344 0.656 26 H 0.344 0.656 27 H 0.147 0.853 28 H 0.172 0.828 29 H 0.179 0.821 30 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.615 -18.621 -1.652 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.201 4.201 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.012 3.988 10 C 0.033 3.967 11 H 0.079 0.921 12 N -0.356 5.356 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.134 4.134 16 C -0.069 4.069 17 C -0.165 4.165 18 C -0.069 4.069 19 N -0.280 5.280 20 S 0.281 5.719 21 C -0.264 4.264 22 H 0.068 0.932 23 H 0.008 0.992 24 H 0.011 0.989 25 H 0.158 0.842 26 H 0.159 0.841 27 H 0.164 0.836 28 H 0.190 0.810 29 H 0.196 0.804 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.171 -16.415 0.501 16.464 hybrid contribution -0.577 -0.559 -1.158 1.410 sum 0.594 -16.974 -0.657 16.997 Atomic orbital electron populations 1.70115 1.07611 1.27250 1.52928 1.25894 0.95672 1.03012 0.95498 0.85462 0.79139 0.79328 0.77487 1.18841 1.20435 1.20901 1.21491 0.93394 0.91370 1.48242 0.92206 1.18870 0.93047 0.92228 0.94624 1.20295 0.93625 0.89802 0.92971 0.92128 1.58606 1.18189 1.55757 1.03079 1.20127 1.00153 0.98144 0.91294 1.21226 0.97789 0.94861 0.97642 1.21189 0.97199 0.95742 0.99260 1.21120 0.97287 0.99627 0.88894 1.20890 1.03556 0.95921 0.96121 1.24609 0.95901 0.99237 0.87110 1.75930 1.17087 1.05629 1.29357 1.85472 1.60899 1.29199 0.96372 1.23461 1.04832 0.99487 0.98603 0.93161 0.99160 0.98929 0.84184 0.84080 0.83593 0.81012 0.80410 0.74748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.51 13.29 21.45 0.28 -58.23 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 3 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 4 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.51 -29.45 8.84 25.60 0.23 -29.23 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.05 2.65 4.60 29.85 0.14 2.79 16 10 C 0.15 6.03 2.85 44.17 0.13 6.16 16 11 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 12 N -0.83 -28.96 8.42 -171.82 -1.45 -30.41 16 13 C -0.09 -3.13 5.05 -20.09 -0.10 -3.23 16 14 C -0.09 -2.40 9.22 22.09 0.20 -2.20 16 15 C -0.11 -2.14 9.92 21.93 0.22 -1.92 16 16 C -0.05 -0.87 10.07 22.48 0.23 -0.65 16 17 C -0.15 -4.08 6.12 -20.20 -0.12 -4.20 16 18 C 0.14 3.46 11.46 86.87 1.00 4.46 16 19 N -0.47 -15.32 11.90 -55.93 -0.67 -15.98 16 20 S 0.13 4.90 23.76 -56.49 -1.34 3.56 16 21 C -0.14 -5.03 6.45 23.03 0.15 -4.88 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.34 9.67 9.06 -89.69 -0.81 8.85 16 26 H 0.34 11.04 7.29 -89.69 -0.65 10.38 16 27 H 0.15 3.21 6.22 -2.91 -0.02 3.19 16 28 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.24 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -74.83 275.47 1.09 -73.74 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -0.29 Total: 11.74 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 2.52 Total: -32.70 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -1.83 Total: -104.62 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.34 Total: 3.56 kcal Total: -74.83 1.09 -73.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261099420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.365 kcal (2) G-P(sol) polarization free energy of solvation -74.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds