Wall clock time and date at job start Mon Mar 30 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.53004 * 109.46847 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47124 * 305.00081 * 10 9 7 12 12 N 1.46900 * 109.47198 * 65.00070 * 10 9 7 13 13 C 1.50700 * 109.47200 * 185.00128 * 10 9 7 14 14 C 1.36751 * 120.12115 * 264.72836 * 13 10 9 15 15 C 1.38928 * 120.15296 * 179.72131 * 14 13 10 16 16 C 1.36080 * 121.15686 * 0.55905 * 15 14 13 17 17 C 1.41162 * 120.20856 * 359.72199 * 16 15 14 18 18 C 1.44963 * 130.66621 * 179.97438 * 17 16 15 19 19 N 1.28728 * 117.83358 * 180.02562 * 18 17 16 20 20 S 1.69384 * 108.99105 * 0.02562 * 19 18 17 21 21 C 1.38737 * 120.12327 * 85.00111 * 13 10 9 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 24 24 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 25 25 H 1.00897 * 111.00031 * 296.05123 * 12 10 9 26 26 H 1.00905 * 110.99604 * 59.99811 * 12 10 9 27 27 H 1.08008 * 119.92581 * 359.97438 * 14 13 10 28 28 H 1.07994 * 119.42528 * 180.25879 * 15 14 13 29 29 H 1.08003 * 119.89656 * 179.70091 * 16 15 14 30 30 H 1.08002 * 121.08505 * 0.05034 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0213 -2.6367 0.0183 11 1 3.5831 -3.1733 0.8599 12 7 3.6379 -3.2971 -1.2366 13 6 5.5227 -2.6383 0.1485 14 6 6.3083 -2.7168 -0.9681 15 6 7.6924 -2.7125 -0.8493 16 6 8.2943 -2.6422 0.3692 17 6 7.5143 -2.5660 1.5432 18 6 7.9088 -2.4843 2.9358 19 7 6.9769 -2.4250 3.8219 20 16 5.4729 -2.4634 3.0438 21 6 6.1130 -2.5658 1.4019 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6826 -0.8776 24 1 3.8711 -0.6783 0.9024 25 1 2.6345 -3.3663 -1.3169 26 1 4.0322 -2.8180 -2.0324 27 1 5.8516 -2.7782 -1.9450 28 1 8.3015 -2.7707 -1.7392 29 1 9.3721 -2.6451 0.4382 30 1 8.9505 -2.4732 3.2205 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261099424.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:31 Heat of formation + Delta-G solvation = 43.746700 kcal Electronic energy + Delta-G solvation = -15336.883132 eV Core-core repulsion = 12836.875466 eV Total energy + Delta-G solvation = -2500.007666 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.85820 -37.05990 -35.17425 -32.51989 -30.65729 -30.06685 -28.66243 -24.79926 -24.24705 -22.26202 -21.28417 -19.91341 -17.99438 -16.90407 -16.04335 -15.83323 -15.17405 -14.72086 -14.46331 -14.10485 -13.85910 -13.29564 -13.12880 -12.58347 -12.27403 -11.91891 -11.90226 -11.50400 -11.16418 -10.87590 -10.53147 -10.43540 -10.25933 -9.86329 -9.54767 -9.32942 -8.77160 -8.66179 -8.08444 -7.60958 -6.16629 -4.16878 0.63833 1.32365 1.62093 2.03810 2.27737 3.22128 3.31370 3.35915 3.74273 4.35006 4.43588 4.61321 5.02285 5.11940 5.18100 5.29566 5.39092 5.61676 5.66029 5.88633 5.98437 6.16160 6.34596 6.43050 6.60185 6.61799 6.88866 6.97649 7.10816 7.60708 7.78831 8.07645 8.36303 8.85087 9.45210 10.95811 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.007707 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.515485 B = 3632.159426 C = 4072.843532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.036 4.036 10 C 0.133 3.867 11 H 0.085 0.915 12 N -0.837 5.837 13 C -0.017 4.017 14 C -0.079 4.079 15 C -0.121 4.121 16 C -0.069 4.069 17 C -0.143 4.143 18 C 0.123 3.877 19 N -0.452 5.452 20 S 0.207 5.793 21 C -0.128 4.128 22 H 0.265 0.735 23 H 0.014 0.986 24 H 0.021 0.979 25 H 0.356 0.644 26 H 0.329 0.671 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.454 -4.806 -0.462 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.075 4.075 10 C 0.021 3.979 11 H 0.103 0.897 12 N -0.367 5.367 13 C -0.022 4.022 14 C -0.102 4.102 15 C -0.141 4.141 16 C -0.091 4.091 17 C -0.155 4.155 18 C -0.087 4.087 19 N -0.263 5.263 20 S 0.360 5.640 21 C -0.249 4.249 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.039 0.961 25 H 0.170 0.830 26 H 0.141 0.859 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 15.268 -5.205 1.796 16.230 hybrid contribution 1.089 1.877 -1.561 2.673 sum 16.357 -3.328 0.235 16.693 Atomic orbital electron populations 1.69899 1.06227 1.27085 1.50166 1.24967 0.94673 0.99074 0.94187 0.86847 0.80567 0.83812 0.78558 1.20269 1.21150 1.18983 1.20983 0.88720 0.94640 1.52064 0.90632 1.20283 0.97880 0.92206 0.97095 1.20363 0.87372 0.96203 0.93991 0.89685 1.59260 1.17999 1.56197 1.03279 1.19086 0.97090 0.96424 0.89592 1.20888 0.93007 0.97548 0.98732 1.20733 0.94972 1.00987 0.97367 1.20501 0.99072 0.99251 0.90286 1.20401 0.92429 1.08383 0.94278 1.23788 1.00312 0.96838 0.87795 1.75745 1.01034 1.20197 1.29313 1.85281 1.10654 1.75616 0.92418 1.23330 0.96421 1.05845 0.99329 0.92549 0.96808 0.96062 0.82974 0.85883 0.84609 0.85418 0.85443 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.53 -14.17 9.10 -34.44 -0.31 -14.49 16 8 H 0.08 2.16 7.39 -52.49 -0.39 1.77 16 9 C -0.04 -0.82 3.67 -27.88 -0.10 -0.92 16 10 C 0.13 2.58 2.91 -68.86 -0.20 2.38 16 11 H 0.09 1.77 8.02 -51.93 -0.42 1.35 16 12 N -0.84 -14.61 8.78 -5.65 -0.05 -14.66 16 13 C -0.02 -0.29 5.03 -104.98 -0.53 -0.82 16 14 C -0.08 -1.13 9.24 -39.86 -0.37 -1.49 16 15 C -0.12 -1.41 9.92 -40.10 -0.40 -1.81 16 16 C -0.07 -0.79 10.07 -39.25 -0.40 -1.19 16 17 C -0.14 -2.04 6.12 -105.14 -0.64 -2.68 16 18 C 0.12 1.61 11.46 -16.19 -0.19 1.42 16 19 N -0.45 -7.17 11.90 30.96 0.37 -6.80 16 20 S 0.21 3.62 23.66 -107.50 -2.54 1.07 16 21 C -0.13 -2.19 6.44 -38.41 -0.25 -2.44 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 24 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 25 H 0.36 6.60 7.90 -39.29 -0.31 6.29 16 26 H 0.33 5.18 7.22 -39.29 -0.28 4.90 16 27 H 0.14 1.74 6.26 -52.48 -0.33 1.41 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 270.00 15.07 4.07 4.07 Total: -1.00 -30.70 270.00 -8.46 -39.16 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -2.93 Total: 6.43 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -3.48 Total: -20.06 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 1.09 Total: -47.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.54 Total: 1.07 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.70 -8.46 -39.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261099424.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.910 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds