Wall clock time and date at job start Mon Mar 30 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.53004 * 109.46847 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47124 * 305.00081 * 10 9 7 12 12 N 1.46900 * 109.47198 * 65.00070 * 10 9 7 13 13 C 1.50700 * 109.47200 * 185.00128 * 10 9 7 14 14 C 1.36751 * 120.12115 * 264.72836 * 13 10 9 15 15 C 1.38928 * 120.15296 * 179.72131 * 14 13 10 16 16 C 1.36080 * 121.15686 * 0.55905 * 15 14 13 17 17 C 1.41162 * 120.20856 * 359.72199 * 16 15 14 18 18 C 1.44963 * 130.66621 * 179.97438 * 17 16 15 19 19 N 1.28728 * 117.83358 * 180.02562 * 18 17 16 20 20 S 1.69384 * 108.99105 * 0.02562 * 19 18 17 21 21 C 1.38737 * 120.12327 * 85.00111 * 13 10 9 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 24 24 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 25 25 H 1.00897 * 111.00031 * 296.05123 * 12 10 9 26 26 H 1.00905 * 110.99604 * 59.99811 * 12 10 9 27 27 H 1.08008 * 119.92581 * 359.97438 * 14 13 10 28 28 H 1.07994 * 119.42528 * 180.25879 * 15 14 13 29 29 H 1.08003 * 119.89656 * 179.70091 * 16 15 14 30 30 H 1.08002 * 121.08505 * 0.05034 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0213 -2.6367 0.0183 11 1 3.5831 -3.1733 0.8599 12 7 3.6379 -3.2971 -1.2366 13 6 5.5227 -2.6383 0.1485 14 6 6.3083 -2.7168 -0.9681 15 6 7.6924 -2.7125 -0.8493 16 6 8.2943 -2.6422 0.3692 17 6 7.5143 -2.5660 1.5432 18 6 7.9088 -2.4843 2.9358 19 7 6.9769 -2.4250 3.8219 20 16 5.4729 -2.4634 3.0438 21 6 6.1130 -2.5658 1.4019 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6826 -0.8776 24 1 3.8711 -0.6783 0.9024 25 1 2.6345 -3.3663 -1.3169 26 1 4.0322 -2.8180 -2.0324 27 1 5.8516 -2.7782 -1.9450 28 1 8.3015 -2.7707 -1.7392 29 1 9.3721 -2.6451 0.4382 30 1 8.9505 -2.4732 3.2205 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261099424.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:30 Heat of formation + Delta-G solvation = 22.511499 kcal Electronic energy + Delta-G solvation = -15337.803960 eV Core-core repulsion = 12836.875466 eV Total energy + Delta-G solvation = -2500.928493 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97223 -38.34282 -36.53124 -34.55829 -31.78655 -31.28385 -30.46179 -26.39277 -25.33117 -23.73454 -22.47652 -21.35732 -19.49056 -18.63314 -17.23706 -17.02598 -16.58538 -16.22166 -15.82778 -15.39764 -15.08820 -15.03068 -14.51134 -14.22795 -13.89139 -13.32338 -13.17215 -12.77866 -12.65010 -12.43353 -12.20297 -12.03139 -11.73294 -11.48737 -11.24428 -10.85850 -10.71137 -9.87903 -9.57997 -8.86969 -8.35587 -6.39514 -0.42951 0.26399 0.43227 0.90382 1.22646 1.26090 1.30810 1.40941 2.28298 2.69764 2.99075 3.42082 3.47880 3.92467 4.01383 4.18864 4.34482 4.37516 4.56228 4.66718 4.69711 4.96084 5.03101 5.07170 5.22763 5.43705 5.52679 5.55563 5.58178 5.90840 6.15401 6.27998 6.64286 6.67011 7.25473 8.80058 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.007707 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.515485 B = 3632.159426 C = 4072.843532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.044 0.956 9 C -0.026 4.026 10 C 0.144 3.856 11 H 0.056 0.944 12 N -0.826 5.826 13 C -0.052 4.052 14 C -0.075 4.075 15 C -0.116 4.116 16 C -0.045 4.045 17 C -0.153 4.153 18 C 0.145 3.855 19 N -0.470 5.470 20 S 0.118 5.882 21 C -0.145 4.145 22 H 0.267 0.733 23 H 0.022 0.978 24 H 0.006 0.994 25 H 0.347 0.653 26 H 0.342 0.658 27 H 0.148 0.852 28 H 0.173 0.827 29 H 0.179 0.821 30 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.968 -4.394 -1.967 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.062 0.938 9 C -0.065 4.065 10 C 0.032 3.968 11 H 0.074 0.926 12 N -0.356 5.356 13 C -0.057 4.057 14 C -0.097 4.097 15 C -0.136 4.136 16 C -0.067 4.067 17 C -0.165 4.165 18 C -0.065 4.065 19 N -0.280 5.280 20 S 0.271 5.729 21 C -0.266 4.266 22 H 0.076 0.924 23 H 0.040 0.960 24 H 0.025 0.975 25 H 0.160 0.840 26 H 0.155 0.845 27 H 0.166 0.834 28 H 0.190 0.810 29 H 0.196 0.804 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 19.805 -4.805 0.279 20.381 hybrid contribution -0.178 1.641 -1.158 2.016 sum 19.627 -3.164 -0.879 19.900 Atomic orbital electron populations 1.70037 1.07935 1.28070 1.52110 1.25825 0.95439 1.02855 0.94154 0.85834 0.79202 0.79369 0.79333 1.18521 1.20991 1.18524 1.21271 0.91002 0.93396 1.50665 0.93776 1.20156 0.94962 0.94955 0.96418 1.20015 0.89715 0.93369 0.93715 0.92558 1.59233 1.17310 1.55853 1.03191 1.18896 0.95442 1.00387 0.90992 1.21210 0.94525 0.95902 0.98084 1.21226 0.93857 0.99243 0.99283 1.21121 1.01348 0.95504 0.88737 1.20825 0.91288 1.08598 0.95802 1.24616 1.01910 0.92966 0.87051 1.75944 1.00038 1.22614 1.29356 1.85446 1.14092 1.78172 0.95186 1.23425 0.97905 1.07125 0.98097 0.92437 0.96013 0.97544 0.84018 0.84484 0.83423 0.81007 0.80387 0.74712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 2 C 0.02 0.89 5.47 84.66 0.46 1.35 16 3 Si 0.94 44.79 27.47 68.60 1.88 46.67 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 7 C -0.53 -29.47 9.10 25.60 0.23 -29.23 16 8 H 0.04 2.68 7.39 -2.91 -0.02 2.66 16 9 C -0.03 -1.21 3.67 29.85 0.11 -1.10 16 10 C 0.14 5.77 2.91 44.17 0.13 5.90 16 11 H 0.06 2.53 8.02 -2.39 -0.02 2.51 16 12 N -0.83 -29.14 8.78 -171.79 -1.51 -30.65 16 13 C -0.05 -1.75 5.03 -20.09 -0.10 -1.85 16 14 C -0.07 -1.90 9.24 22.09 0.20 -1.69 16 15 C -0.12 -2.06 9.92 21.93 0.22 -1.84 16 16 C -0.05 -0.77 10.07 22.49 0.23 -0.54 16 17 C -0.15 -3.84 6.12 -20.20 -0.12 -3.97 16 18 C 0.14 3.30 11.46 86.87 1.00 4.30 16 19 N -0.47 -14.55 11.90 -55.95 -0.67 -15.22 16 20 S 0.12 4.35 23.66 -56.49 -1.34 3.01 16 21 C -0.14 -4.87 6.44 23.03 0.15 -4.72 16 22 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 23 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 24 H 0.01 0.31 7.20 -2.38 -0.02 0.29 16 25 H 0.35 13.39 7.90 -89.70 -0.71 12.68 16 26 H 0.34 10.43 7.22 -89.69 -0.65 9.78 16 27 H 0.15 3.29 6.26 -2.91 -0.02 3.28 16 28 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.24 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -71.29 270.00 0.95 -70.34 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.23 Total: 17.20 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 2.50 Total: -33.40 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -1.88 Total: -103.82 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.34 Total: 3.01 kcal Total: -71.29 0.95 -70.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261099424.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.856 kcal (2) G-P(sol) polarization free energy of solvation -71.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds