Wall clock time and date at job start Mon Mar 30 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47300 * 2 1 4 4 C 1.50702 * 109.47374 * 120.00507 * 2 1 3 5 5 H 1.07991 * 120.00177 * 119.99640 * 4 2 1 6 6 C 1.37878 * 119.99420 * 299.99538 * 4 2 1 7 7 N 1.31511 * 120.00381 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99634 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47214 * 60.00409 * 8 6 4 10 10 H 1.48503 * 109.46782 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47341 * 300.00250 * 8 6 4 12 12 C 1.50704 * 109.46748 * 239.99862 * 2 1 3 13 13 C 1.31834 * 124.29792 * 120.00058 * 12 2 1 14 14 C 1.45408 * 114.88308 * 179.97438 * 13 12 2 15 15 C 1.41223 * 129.23553 * 179.97438 * 14 13 12 16 16 C 1.37513 * 120.29355 * 180.02562 * 15 14 13 17 17 O 1.35988 * 119.83539 * 179.97438 * 16 15 14 18 18 C 1.39283 * 120.31875 * 359.93353 * 16 15 14 19 19 C 1.37380 * 120.15099 * 0.02705 * 18 16 15 20 20 C 1.39689 * 111.85529 * 0.02562 * 14 13 12 21 21 S 1.75287 * 124.30799 * 300.23487 * 12 2 1 22 22 H 1.08998 * 109.46664 * 299.99451 * 1 2 3 23 23 H 1.08998 * 109.47400 * 59.99764 * 1 2 3 24 24 H 1.08995 * 109.46847 * 180.02562 * 1 2 3 25 25 H 0.97003 * 120.00420 * 179.97438 * 7 6 4 26 26 H 1.07999 * 122.56112 * 359.95422 * 13 12 2 27 27 H 1.07996 * 119.85065 * 0.02562 * 15 14 13 28 28 H 0.96699 * 113.99839 * 269.97287 * 17 16 15 29 29 H 1.08003 * 119.91862 * 179.97438 * 18 16 15 30 30 H 1.08004 * 119.79407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1211 4.0081 10 1 1.8272 -0.4200 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0323 -0.7105 -1.2305 13 6 2.7933 -0.1531 -2.1515 14 6 3.1597 -1.0278 -3.2538 15 6 3.9526 -0.7500 -4.3890 16 6 4.1835 -1.7262 -5.3295 17 8 4.9480 -1.4484 -6.4193 18 6 3.6389 -2.9983 -5.1709 19 6 2.8659 -3.2859 -4.0722 20 6 2.6168 -2.3063 -3.1057 21 16 1.6742 -2.3811 -1.6221 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.7083 1.1608 3.4844 26 1 3.1194 0.8747 -2.0920 27 1 4.3794 0.2335 -4.5189 28 1 4.4474 -1.1139 -7.1760 29 1 3.8241 -3.7601 -5.9138 30 1 2.4468 -4.2744 -3.9548 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261101909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:50 Heat of formation + Delta-G solvation = -13.344271 kcal Electronic energy + Delta-G solvation = -14964.079925 eV Core-core repulsion = 12429.303858 eV Total energy + Delta-G solvation = -2534.776067 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59037 -37.25232 -35.41451 -33.23500 -30.88386 -29.99644 -27.72707 -25.24861 -23.22834 -22.76145 -20.85979 -19.61713 -17.98196 -17.08288 -16.38592 -15.60813 -15.21093 -14.76059 -14.38193 -13.68249 -13.34379 -13.16664 -12.82143 -12.68472 -11.94969 -11.60535 -11.42037 -11.10497 -10.97499 -10.63200 -10.48736 -10.42247 -10.17654 -9.98730 -9.74992 -9.27230 -9.09187 -8.47763 -7.85324 -7.20415 -6.11714 -4.19856 1.13914 1.31623 2.08574 2.69200 2.82448 3.27741 3.31867 3.35795 3.80913 4.25308 4.36250 4.93152 5.07174 5.19936 5.39217 5.50169 5.72780 6.04237 6.08724 6.29944 6.30515 6.48945 6.64268 6.73428 6.84050 6.87950 7.03871 7.10904 7.53980 7.67937 7.73902 7.94574 8.21330 8.81650 9.45849 10.93905 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.040139 B = 0.005510 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.409327 B = 5080.813307 C = 5165.970349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.049 0.951 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.068 4.068 13 C -0.183 4.183 14 C -0.039 4.039 15 C -0.116 4.116 16 C 0.096 3.904 17 O -0.500 6.500 18 C -0.148 4.148 19 C -0.063 4.063 20 C -0.171 4.171 21 S 0.098 5.902 22 H 0.091 0.909 23 H 0.013 0.987 24 H 0.030 0.970 25 H 0.264 0.736 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.385 0.615 29 H 0.128 0.872 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 -4.365 -13.315 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 H 0.067 0.933 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.184 4.184 13 C -0.211 4.211 14 C -0.048 4.048 15 C -0.136 4.136 16 C 0.049 3.951 17 O -0.310 6.310 18 C -0.169 4.169 19 C -0.085 4.085 20 C -0.286 4.286 21 S 0.363 5.637 22 H 0.109 0.891 23 H 0.032 0.968 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.157 0.843 27 H 0.145 0.855 28 H 0.240 0.760 29 H 0.146 0.854 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.482 -5.513 -12.021 13.308 hybrid contribution 0.858 0.849 -0.142 1.216 sum 2.340 -4.663 -12.163 13.235 Atomic orbital electron populations 1.21838 0.96957 0.99663 1.00850 1.17705 0.93134 0.95277 0.86489 0.93273 1.21044 1.31992 1.12763 0.89632 0.92145 1.24928 0.94774 0.94904 0.99005 1.69857 1.36188 1.22698 1.23861 0.86582 0.79349 0.79837 0.81902 1.20109 1.21144 1.20040 1.24932 0.97960 0.95503 1.00003 1.20750 1.05002 1.00863 0.94443 1.19210 0.97787 0.92598 0.95211 1.21106 0.99063 0.99379 0.94082 1.18029 0.94985 0.92712 0.89386 1.84859 1.35721 1.87123 1.23263 1.21084 0.99639 0.96870 0.99283 1.20265 0.98073 0.97727 0.92444 1.22966 1.06216 0.97776 1.01636 1.84190 1.52554 1.12507 1.14464 0.89070 0.96791 0.95039 0.92651 0.84296 0.85478 0.76030 0.85381 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.09 2.30 2.64 -92.92 -0.25 2.05 16 3 H 0.05 1.28 8.06 -51.93 -0.42 0.86 16 4 C -0.52 -13.76 8.43 -34.44 -0.29 -14.05 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 C -0.07 -1.46 4.95 -36.20 -0.18 -1.64 16 13 C -0.18 -3.58 10.16 -38.63 -0.39 -3.98 16 14 C -0.04 -0.69 6.04 -105.37 -0.64 -1.33 16 15 C -0.12 -1.79 10.02 -38.71 -0.39 -2.17 16 16 C 0.10 1.33 6.67 -39.46 -0.26 1.06 16 17 O -0.50 -5.84 13.49 -19.70 -0.27 -6.11 16 18 C -0.15 -1.95 9.96 -39.51 -0.39 -2.34 16 19 C -0.06 -0.91 10.05 -39.29 -0.40 -1.31 16 20 C -0.17 -3.00 6.48 -38.44 -0.25 -3.25 16 21 S 0.10 1.88 22.74 -107.50 -2.44 -0.56 16 22 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.03 0.71 7.92 -51.93 -0.41 0.30 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 27 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.38 2.51 9.06 45.56 0.41 2.92 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -28.99 275.52 -8.54 -37.52 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -2.39 Total: 1.05 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -3.20 Total: -28.11 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.63 Total: -23.82 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.27 Total: -6.11 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.44 Total: -0.56 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.99 -8.54 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261101909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.178 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds