Wall clock time and date at job start Mon Mar 30 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47300 * 2 1 4 4 C 1.50702 * 109.47374 * 120.00507 * 2 1 3 5 5 H 1.07991 * 120.00177 * 119.99640 * 4 2 1 6 6 C 1.37878 * 119.99420 * 299.99538 * 4 2 1 7 7 N 1.31511 * 120.00381 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99634 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47214 * 60.00409 * 8 6 4 10 10 H 1.48503 * 109.46782 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47341 * 300.00250 * 8 6 4 12 12 C 1.50704 * 109.46748 * 239.99862 * 2 1 3 13 13 C 1.31834 * 124.29792 * 120.00058 * 12 2 1 14 14 C 1.45408 * 114.88308 * 179.97438 * 13 12 2 15 15 C 1.41223 * 129.23553 * 179.97438 * 14 13 12 16 16 C 1.37513 * 120.29355 * 180.02562 * 15 14 13 17 17 O 1.35988 * 119.83539 * 179.97438 * 16 15 14 18 18 C 1.39283 * 120.31875 * 359.93353 * 16 15 14 19 19 C 1.37380 * 120.15099 * 0.02705 * 18 16 15 20 20 C 1.39689 * 111.85529 * 0.02562 * 14 13 12 21 21 S 1.75287 * 124.30799 * 300.23487 * 12 2 1 22 22 H 1.08998 * 109.46664 * 299.99451 * 1 2 3 23 23 H 1.08998 * 109.47400 * 59.99764 * 1 2 3 24 24 H 1.08995 * 109.46847 * 180.02562 * 1 2 3 25 25 H 0.97003 * 120.00420 * 179.97438 * 7 6 4 26 26 H 1.07999 * 122.56112 * 359.95422 * 13 12 2 27 27 H 1.07996 * 119.85065 * 0.02562 * 15 14 13 28 28 H 0.96699 * 113.99839 * 269.97287 * 17 16 15 29 29 H 1.08003 * 119.91862 * 179.97438 * 18 16 15 30 30 H 1.08004 * 119.79407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1211 4.0081 10 1 1.8272 -0.4200 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0323 -0.7105 -1.2305 13 6 2.7933 -0.1531 -2.1515 14 6 3.1597 -1.0278 -3.2538 15 6 3.9526 -0.7500 -4.3890 16 6 4.1835 -1.7262 -5.3295 17 8 4.9480 -1.4484 -6.4193 18 6 3.6389 -2.9983 -5.1709 19 6 2.8659 -3.2859 -4.0722 20 6 2.6168 -2.3063 -3.1057 21 16 1.6742 -2.3811 -1.6221 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.7083 1.1608 3.4844 26 1 3.1194 0.8747 -2.0920 27 1 4.3794 0.2335 -4.5189 28 1 4.4474 -1.1139 -7.1760 29 1 3.8241 -3.7601 -5.9138 30 1 2.4468 -4.2744 -3.9548 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261101909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:50 Heat of formation + Delta-G solvation = -30.319074 kcal Electronic energy + Delta-G solvation = -14964.816008 eV Core-core repulsion = 12429.303858 eV Total energy + Delta-G solvation = -2535.512150 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75064 -38.46210 -36.98368 -34.87122 -32.62077 -31.20314 -29.15332 -27.27766 -24.67069 -24.02507 -22.34668 -21.11837 -19.17920 -18.41622 -18.24079 -17.00589 -16.44770 -16.32499 -15.76244 -15.04295 -14.86840 -14.59279 -14.29675 -14.23215 -13.46280 -13.19335 -12.95318 -12.85424 -12.69534 -12.37817 -12.22202 -11.85281 -11.77193 -11.44520 -11.37618 -11.00814 -10.52410 -10.48295 -9.23684 -8.58637 -8.15181 -6.30120 -0.15314 0.16657 0.68086 1.22751 1.38540 1.42171 1.43881 1.51124 2.41002 2.62926 3.13075 3.22733 3.75511 3.92484 4.20295 4.31301 4.48269 4.73096 4.74614 4.80444 4.96639 5.00151 5.12643 5.14787 5.31500 5.42667 5.44032 5.57504 5.76382 5.77366 5.95741 6.23025 6.75825 6.88986 7.38197 8.89197 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.040139 B = 0.005510 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.409327 B = 5080.813307 C = 5165.970349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.096 3.904 3 H 0.021 0.979 4 C -0.530 4.530 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.270 1.270 12 C -0.108 4.108 13 C -0.173 4.173 14 C -0.063 4.063 15 C -0.125 4.125 16 C 0.109 3.891 17 O -0.502 6.502 18 C -0.131 4.131 19 C -0.067 4.067 20 C -0.178 4.178 21 S 0.083 5.917 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.265 0.735 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.411 0.589 29 H 0.165 0.835 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -5.885 -15.463 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 H 0.039 0.961 4 C -0.568 4.568 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.195 1.195 12 C -0.223 4.223 13 C -0.201 4.201 14 C -0.072 4.072 15 C -0.145 4.145 16 C 0.062 3.938 17 O -0.316 6.316 18 C -0.152 4.152 19 C -0.089 4.089 20 C -0.293 4.293 21 S 0.348 5.652 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.160 0.840 27 H 0.158 0.842 28 H 0.271 0.729 29 H 0.182 0.818 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.591 -7.023 -14.196 16.049 hybrid contribution 0.622 1.316 0.267 1.480 sum 3.212 -5.708 -13.929 15.392 Atomic orbital electron populations 1.21662 0.96676 0.99455 1.00347 1.17467 0.93443 0.93949 0.87567 0.96112 1.21288 1.31888 1.12659 0.90957 0.92976 1.25656 0.94995 0.95591 1.01639 1.69973 1.37021 1.23747 1.24397 0.85673 0.78754 0.78942 0.78738 1.19903 1.20503 1.19505 1.24557 1.00614 0.97118 1.00049 1.20966 1.03371 1.01257 0.94519 1.19236 0.99558 0.92547 0.95849 1.21289 0.98904 1.00700 0.93611 1.18105 0.93650 0.92514 0.89529 1.84803 1.36002 1.87230 1.23540 1.21500 0.97498 0.97275 0.98948 1.20623 0.98219 0.98162 0.91891 1.23102 1.06252 0.98607 1.01369 1.83964 1.53794 1.11063 1.16394 0.91451 0.95195 0.94975 0.92612 0.84011 0.84235 0.72931 0.81767 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.87 71.98 0.64 -5.36 16 2 C 0.10 4.88 2.64 -12.28 -0.03 4.84 16 3 H 0.02 1.15 8.06 -2.39 -0.02 1.13 16 4 C -0.53 -29.13 8.43 25.60 0.22 -28.91 16 5 H 0.05 2.88 7.74 -2.92 -0.02 2.86 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.63 11.32 21.45 0.24 -51.39 16 8 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 C -0.11 -4.77 4.95 24.90 0.12 -4.65 16 13 C -0.17 -6.88 10.16 23.32 0.24 -6.64 16 14 C -0.06 -2.21 6.04 -20.35 -0.12 -2.33 16 15 C -0.12 -3.54 10.02 22.83 0.23 -3.31 16 16 C 0.11 2.59 6.67 22.35 0.15 2.73 16 17 O -0.50 -9.40 13.49 -93.41 -1.26 -10.66 16 18 C -0.13 -2.86 9.96 22.32 0.22 -2.63 16 19 C -0.07 -1.72 10.05 22.46 0.23 -1.49 16 20 C -0.18 -6.01 6.48 23.01 0.15 -5.86 16 21 S 0.08 3.23 22.74 -56.49 -1.28 1.95 16 22 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.03 1.50 7.92 -2.39 -0.02 1.48 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.14 5.32 8.06 -2.91 -0.02 5.30 16 27 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.41 3.34 9.06 -74.06 -0.67 2.67 16 29 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -63.23 275.52 2.70 -60.53 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.49 Total: 6.21 kcal Atomic # 6 Polarization: -54.51 SS G_CDS: 2.48 Total: -52.02 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.24 Total: -51.39 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.26 Total: -10.66 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.28 Total: 1.95 kcal Total: -63.23 2.70 -60.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261101909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.210 kcal (2) G-P(sol) polarization free energy of solvation -63.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds