Wall clock time and date at job start Mon Mar 30 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00061 * 2 1 4 4 H 1.48502 * 109.47140 * 270.00558 * 3 2 1 5 5 H 1.48499 * 109.46727 * 30.00226 * 3 2 1 6 6 H 1.48494 * 109.47365 * 150.00350 * 3 2 1 7 7 C 1.37875 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99849 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47249 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46651 * 304.99768 * 10 9 7 12 12 N 1.46900 * 109.47366 * 64.99682 * 10 9 7 13 13 C 1.50697 * 109.47281 * 184.99953 * 10 9 7 14 14 C 1.38786 * 119.96581 * 280.01962 * 13 10 9 15 15 C 1.36182 * 120.78213 * 179.97438 * 14 13 10 16 16 C 1.40967 * 120.42336 * 0.02562 * 15 14 13 17 17 N 1.34661 * 129.69204 * 180.02562 * 16 15 14 18 18 C 1.27931 * 117.84900 * 179.97438 * 17 16 15 19 19 S 1.70648 * 111.52127 * 359.76506 * 18 17 16 20 20 C 1.39921 * 118.50351 * 359.97438 * 16 15 14 21 21 C 1.37651 * 119.96845 * 99.99715 * 13 10 9 22 22 H 0.96989 * 120.00115 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47562 * 59.99393 * 9 7 2 24 24 H 1.09004 * 109.46907 * 299.99457 * 9 7 2 25 25 H 1.00894 * 110.99931 * 59.99887 * 12 10 9 26 26 H 1.00897 * 110.99814 * 183.95700 * 12 10 9 27 27 H 1.07998 * 119.61195 * 359.97438 * 14 13 10 28 28 H 1.08003 * 119.78935 * 180.02562 * 15 14 13 29 29 H 1.07998 * 124.23793 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.02670 * 0.04656 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 1 3.5873 -3.1752 0.8412 12 7 3.6325 -3.2936 -1.2559 13 6 5.5236 -2.6382 0.1222 14 6 6.3110 -2.3957 -0.9946 15 6 7.6697 -2.3929 -0.9021 16 6 8.3015 -2.6375 0.3341 17 7 9.6131 -2.6782 0.6364 18 6 9.9397 -2.9225 1.8490 19 16 8.5646 -3.1417 2.8356 20 6 7.5018 -2.8812 1.4561 21 6 6.1131 -2.8797 1.3425 22 1 -0.4850 0.8399 0.0004 23 1 3.8753 -0.6803 0.8887 24 1 3.8745 -0.6800 -0.8912 25 1 4.0230 -2.8125 -2.0521 26 1 3.9016 -4.2660 -1.2533 27 1 5.8408 -2.2071 -1.9483 28 1 8.2670 -2.2019 -1.7814 29 1 10.9579 -2.9794 2.2044 30 1 5.4997 -3.0687 2.2111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:49 Heat of formation + Delta-G solvation = 54.161397 kcal Electronic energy + Delta-G solvation = -15076.521020 eV Core-core repulsion = 12576.964970 eV Total energy + Delta-G solvation = -2499.556051 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44777 -37.80580 -34.75103 -32.35466 -31.20316 -29.33086 -28.89138 -25.51561 -23.60013 -22.90777 -21.45225 -19.89764 -18.36393 -16.87135 -16.44466 -15.87420 -15.24264 -14.98785 -14.78425 -14.12376 -13.89605 -13.74147 -13.27472 -12.64297 -12.36154 -12.14121 -12.02106 -11.54105 -11.10605 -10.81965 -10.31926 -10.18152 -10.12806 -9.81388 -9.76526 -9.16454 -8.59122 -8.49162 -8.14011 -8.01725 -5.96967 -3.92690 0.38802 1.16697 1.19610 1.64810 2.32677 3.32220 3.40353 3.42851 3.68645 3.91801 4.48955 4.60161 4.91248 5.01145 5.15583 5.29051 5.30817 5.40310 5.54393 5.83949 5.98681 6.13170 6.19790 6.39800 6.58009 6.73485 7.04285 7.23535 7.48523 7.71862 7.86492 8.01723 8.63494 9.15164 9.64939 11.16668 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.005570 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.880376 B = 5025.498263 C = 5208.708309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.000 4.000 10 C 0.142 3.858 11 H 0.088 0.912 12 N -0.816 5.816 13 C -0.078 4.078 14 C -0.104 4.104 15 C -0.061 4.061 16 C 0.059 3.941 17 N -0.462 5.462 18 C 0.054 3.946 19 S 0.083 5.917 20 C -0.168 4.168 21 C -0.074 4.074 22 H 0.261 0.739 23 H 0.020 0.980 24 H 0.013 0.987 25 H 0.334 0.666 26 H 0.327 0.673 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.200 0.800 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.441 -6.771 2.862 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.535 4.535 8 H 0.100 0.900 9 C -0.038 4.038 10 C 0.030 3.970 11 H 0.106 0.894 12 N -0.343 5.343 13 C -0.084 4.084 14 C -0.125 4.125 15 C -0.082 4.082 16 C -0.060 4.060 17 N -0.174 5.174 18 C -0.251 4.251 19 S 0.336 5.664 20 C -0.286 4.286 21 C -0.097 4.097 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.217 0.783 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.903 -6.592 3.733 19.440 hybrid contribution 1.309 1.060 -0.899 1.909 sum 19.212 -5.532 2.834 20.193 Atomic orbital electron populations 1.69897 1.06133 1.26553 1.51827 1.24986 0.94672 0.98706 0.95203 0.86922 0.80354 0.84414 0.78414 1.20438 1.21455 1.19298 1.21000 0.88562 0.94657 1.49235 0.90043 1.19640 0.98103 0.89537 0.96487 1.20645 0.83940 0.99151 0.93283 0.89396 1.58793 1.66947 1.05107 1.03493 1.21539 0.99928 0.94658 0.92298 1.20643 0.92733 0.99690 0.99455 1.20319 0.94178 0.98952 0.94720 1.19172 0.86451 1.05373 0.94983 1.66176 1.17258 1.15237 1.18751 1.27972 1.04082 1.01689 0.91406 1.83939 0.98403 1.71928 1.12096 1.23826 0.99439 1.09137 0.96218 1.20293 0.90294 1.00697 0.98425 0.92901 0.96180 0.96926 0.85184 0.86177 0.84789 0.85013 0.78293 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 2 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.50 -13.78 9.39 -34.44 -0.32 -14.11 16 8 H 0.08 2.47 7.99 -52.49 -0.42 2.06 16 9 C 0.00 0.00 3.67 -27.88 -0.10 -0.10 16 10 C 0.14 2.59 2.93 -68.87 -0.20 2.39 16 11 H 0.09 1.65 8.00 -51.93 -0.42 1.23 16 12 N -0.82 -13.83 8.77 -5.65 -0.05 -13.88 16 13 C -0.08 -1.23 4.94 -104.63 -0.52 -1.75 16 14 C -0.10 -1.49 9.20 -40.12 -0.37 -1.86 16 15 C -0.06 -0.85 10.05 -39.29 -0.39 -1.24 16 16 C 0.06 0.89 7.00 -84.96 -0.59 0.29 16 17 N -0.46 -6.47 10.57 -12.96 -0.14 -6.61 16 18 C 0.05 0.58 12.10 51.14 0.62 1.20 16 19 S 0.08 0.94 23.17 -107.50 -2.49 -1.55 16 20 C -0.17 -2.44 6.56 -38.54 -0.25 -2.70 16 21 C -0.07 -1.11 9.69 -39.39 -0.38 -1.50 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 25 H 0.33 5.21 7.33 -39.30 -0.29 4.92 16 26 H 0.33 4.63 9.06 -39.29 -0.36 4.27 16 27 H 0.13 1.69 6.64 -52.49 -0.35 1.34 16 28 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.20 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.85 8.03 -52.48 -0.42 1.43 16 LS Contribution 271.93 15.07 4.10 4.10 Total: -1.00 -32.31 271.93 -8.12 -40.42 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.03 Total: 5.21 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.62 Total: -17.60 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.59 Total: -47.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.31 -8.12 -40.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.586 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds