Wall clock time and date at job start Mon Mar 30 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00061 * 2 1 4 4 H 1.48502 * 109.47140 * 270.00558 * 3 2 1 5 5 H 1.48499 * 109.46727 * 30.00226 * 3 2 1 6 6 H 1.48494 * 109.47365 * 150.00350 * 3 2 1 7 7 C 1.37875 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99849 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47249 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46651 * 304.99768 * 10 9 7 12 12 N 1.46900 * 109.47366 * 64.99682 * 10 9 7 13 13 C 1.50697 * 109.47281 * 184.99953 * 10 9 7 14 14 C 1.38786 * 119.96581 * 280.01962 * 13 10 9 15 15 C 1.36182 * 120.78213 * 179.97438 * 14 13 10 16 16 C 1.40967 * 120.42336 * 0.02562 * 15 14 13 17 17 N 1.34661 * 129.69204 * 180.02562 * 16 15 14 18 18 C 1.27931 * 117.84900 * 179.97438 * 17 16 15 19 19 S 1.70648 * 111.52127 * 359.76506 * 18 17 16 20 20 C 1.39921 * 118.50351 * 359.97438 * 16 15 14 21 21 C 1.37651 * 119.96845 * 99.99715 * 13 10 9 22 22 H 0.96989 * 120.00115 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47562 * 59.99393 * 9 7 2 24 24 H 1.09004 * 109.46907 * 299.99457 * 9 7 2 25 25 H 1.00894 * 110.99931 * 59.99887 * 12 10 9 26 26 H 1.00897 * 110.99814 * 183.95700 * 12 10 9 27 27 H 1.07998 * 119.61195 * 359.97438 * 14 13 10 28 28 H 1.08003 * 119.78935 * 180.02562 * 15 14 13 29 29 H 1.07998 * 124.23793 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.02670 * 0.04656 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 1 3.5873 -3.1752 0.8412 12 7 3.6325 -3.2936 -1.2559 13 6 5.5236 -2.6382 0.1222 14 6 6.3110 -2.3957 -0.9946 15 6 7.6697 -2.3929 -0.9021 16 6 8.3015 -2.6375 0.3341 17 7 9.6131 -2.6782 0.6364 18 6 9.9397 -2.9225 1.8490 19 16 8.5646 -3.1417 2.8356 20 6 7.5018 -2.8812 1.4561 21 6 6.1131 -2.8797 1.3425 22 1 -0.4850 0.8399 0.0004 23 1 3.8753 -0.6803 0.8887 24 1 3.8745 -0.6800 -0.8912 25 1 4.0230 -2.8125 -2.0521 26 1 3.9016 -4.2660 -1.2533 27 1 5.8408 -2.2071 -1.9483 28 1 8.2670 -2.2019 -1.7814 29 1 10.9579 -2.9794 2.2044 30 1 5.4997 -3.0687 2.2111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261102044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:49 Heat of formation + Delta-G solvation = 31.240581 kcal Electronic energy + Delta-G solvation = -15077.514942 eV Core-core repulsion = 12576.964970 eV Total energy + Delta-G solvation = -2500.549972 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49010 -38.98363 -36.15508 -34.39917 -32.27776 -30.75828 -30.43226 -26.76268 -25.10506 -23.98779 -22.83265 -21.28838 -19.41507 -18.87233 -17.53853 -17.08106 -16.58685 -16.23569 -16.04508 -15.78702 -15.07790 -14.93111 -14.59046 -14.36748 -13.65511 -13.54773 -13.43684 -13.04997 -12.79660 -12.18654 -11.87042 -11.76161 -11.73689 -11.29171 -11.18410 -10.71718 -10.69906 -9.72772 -9.39958 -9.08136 -8.19268 -6.19240 -0.61049 0.09483 0.25741 0.71593 1.30705 1.36305 1.38280 1.48425 2.40018 2.59955 3.03585 3.14749 3.56274 3.74098 3.88131 4.12472 4.18775 4.27024 4.42513 4.60407 4.80026 4.81951 5.05425 5.09526 5.20268 5.31524 5.55581 5.64489 5.72259 6.35498 6.50704 6.53558 6.80348 6.90323 7.41998 8.97893 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.005570 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.880376 B = 5025.498263 C = 5208.708309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.002 3.998 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.495 4.495 8 H 0.041 0.959 9 C 0.003 3.997 10 C 0.154 3.846 11 H 0.075 0.925 12 N -0.830 5.830 13 C -0.093 4.093 14 C -0.103 4.103 15 C -0.067 4.067 16 C 0.050 3.950 17 N -0.494 5.494 18 C 0.070 3.930 19 S 0.123 5.877 20 C -0.197 4.197 21 C -0.078 4.078 22 H 0.262 0.738 23 H 0.017 0.983 24 H 0.018 0.982 25 H 0.343 0.657 26 H 0.343 0.657 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.244 0.756 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.544 -6.429 3.236 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.533 4.533 8 H 0.059 0.941 9 C -0.034 4.034 10 C 0.042 3.958 11 H 0.093 0.907 12 N -0.360 5.360 13 C -0.099 4.099 14 C -0.124 4.124 15 C -0.088 4.088 16 C -0.069 4.069 17 N -0.207 5.207 18 C -0.234 4.234 19 S 0.377 5.623 20 C -0.316 4.316 21 C -0.101 4.101 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.157 0.843 26 H 0.157 0.843 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.260 0.740 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 21.026 -6.275 4.112 22.325 hybrid contribution 0.428 0.827 -0.918 1.308 sum 21.454 -5.447 3.195 22.364 Atomic orbital electron populations 1.70061 1.08100 1.27587 1.53928 1.25881 0.95455 1.02837 0.95184 0.85816 0.79360 0.79418 0.78939 1.19418 1.21383 1.17671 1.21264 0.91231 0.93018 1.47816 0.94077 1.19533 0.94675 0.92878 0.96345 1.20193 0.85872 0.96230 0.93480 0.90711 1.58701 1.67638 1.06330 1.03361 1.21157 0.98106 0.97221 0.93438 1.20742 0.92920 0.99267 0.99441 1.20540 0.94151 0.98725 0.95355 1.19517 0.87209 1.04774 0.95433 1.66261 1.16646 1.17548 1.20235 1.28803 1.05853 0.98311 0.90421 1.83837 0.97314 1.70864 1.10295 1.24067 0.99558 1.09921 0.98056 1.20367 0.90984 1.00420 0.98330 0.92890 0.96447 0.96327 0.84258 0.84346 0.83504 0.83180 0.74004 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 2 C 0.00 0.11 5.47 84.65 0.46 0.58 16 3 Si 0.94 44.74 27.47 68.60 1.88 46.62 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.49 -28.09 9.39 25.60 0.24 -27.85 16 8 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 9 C 0.00 0.15 3.67 29.85 0.11 0.26 16 10 C 0.15 5.65 2.93 44.17 0.13 5.78 16 11 H 0.07 2.88 8.00 -2.38 -0.02 2.86 16 12 N -0.83 -28.02 8.77 -171.80 -1.51 -29.53 16 13 C -0.09 -2.86 4.94 -19.87 -0.10 -2.96 16 14 C -0.10 -2.78 9.20 21.92 0.20 -2.58 16 15 C -0.07 -1.75 10.05 22.46 0.23 -1.52 16 16 C 0.05 1.40 7.00 39.79 0.28 1.68 16 17 N -0.49 -12.47 10.57 -194.76 -2.06 -14.53 16 18 C 0.07 1.26 12.10 130.81 1.58 2.84 16 19 S 0.12 2.41 23.17 -56.49 -1.31 1.10 16 20 C -0.20 -5.40 6.56 22.94 0.15 -5.25 16 21 C -0.08 -2.28 9.69 22.40 0.22 -2.07 16 22 H 0.26 15.59 8.31 -92.72 -0.77 14.82 16 23 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 24 H 0.02 0.82 7.57 -2.38 -0.02 0.80 16 25 H 0.34 10.42 7.33 -89.70 -0.66 9.76 16 26 H 0.34 9.58 9.06 -89.70 -0.81 8.77 16 27 H 0.15 3.46 6.64 -2.91 -0.02 3.44 16 28 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 29 H 0.24 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.14 3.74 8.03 -2.91 -0.02 3.71 16 Total: -1.00 -70.54 271.93 0.47 -70.08 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.34 Total: 17.50 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.50 Total: -31.10 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -3.27 Total: -104.20 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Total: -70.54 0.47 -70.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.317 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds