Wall clock time and date at job start Mon Mar 30 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38971 * 119.41875 * 279.99741 * 13 10 9 15 15 C 1.36709 * 120.15717 * 179.97438 * 14 13 10 16 16 C 1.38789 * 119.75403 * 0.02562 * 15 14 13 17 17 S 1.76510 * 133.55909 * 179.97438 * 16 15 14 18 18 N 1.69386 * 96.11985 * 180.02562 * 17 16 15 19 19 C 1.28725 * 108.98966 * 359.97438 * 18 17 16 20 20 C 1.40810 * 120.92037 * 0.02562 * 16 15 14 21 21 C 1.36037 * 119.42173 * 99.73070 * 13 10 9 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 26 26 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 27 27 H 1.08007 * 119.92147 * 359.97438 * 14 13 10 28 28 H 1.08001 * 120.12911 * 179.97438 * 15 14 13 29 29 H 1.08001 * 121.09404 * 180.02562 * 19 18 17 30 30 H 1.08001 * 119.89802 * 359.97438 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.3056 -2.3965 -0.9817 15 6 7.6690 -2.3938 -0.8807 16 6 8.2692 -2.6340 0.3474 17 16 9.9483 -2.7157 0.8854 18 7 9.6016 -3.0528 2.5088 19 6 8.3246 -3.1050 2.6623 20 6 7.4931 -2.8819 1.4959 21 6 6.0881 -2.8706 1.3563 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 2.6347 -3.3652 -1.3250 26 1 4.0322 -2.8162 -2.0400 27 1 5.8357 -2.2103 -1.9362 28 1 8.2769 -2.2064 -1.7535 29 1 7.8868 -3.3090 3.6283 30 1 5.4602 -3.0514 2.2162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:43 Heat of formation + Delta-G solvation = 40.834860 kcal Electronic energy + Delta-G solvation = -15055.105456 eV Core-core repulsion = 12554.971523 eV Total energy + Delta-G solvation = -2500.133933 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94185 -37.22563 -35.04984 -32.51286 -31.02849 -29.92946 -28.68150 -25.00734 -23.90287 -22.68141 -21.41580 -19.61766 -18.12192 -17.11888 -16.03559 -15.94373 -15.44417 -14.53996 -14.26677 -14.09194 -13.76194 -13.70650 -13.23619 -12.82147 -12.31860 -12.09085 -11.75693 -11.65408 -11.14740 -10.82598 -10.67823 -10.46576 -10.41533 -9.92638 -9.67421 -9.37002 -8.82797 -8.69970 -8.08691 -7.73777 -6.20062 -4.20555 0.52003 1.28583 1.41652 1.81052 2.16509 3.19406 3.28812 3.31884 3.70518 4.31373 4.33779 4.58105 4.92083 5.12853 5.21225 5.32462 5.47061 5.50214 5.57248 5.86449 5.95557 6.10847 6.25931 6.36190 6.44807 6.70242 6.84243 6.94925 7.10615 7.58141 7.79642 8.07872 8.33160 8.82098 9.41795 10.92417 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.034329 B = 0.005407 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.439103 B = 5177.045270 C = 5369.668100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.038 4.038 10 C 0.135 3.865 11 H 0.086 0.914 12 N -0.839 5.839 13 C -0.055 4.055 14 C -0.062 4.062 15 C -0.087 4.087 16 C -0.137 4.137 17 S 0.158 5.842 18 N -0.447 5.447 19 C 0.136 3.864 20 C -0.139 4.139 21 C -0.051 4.051 22 H 0.265 0.735 23 H 0.013 0.987 24 H 0.021 0.979 25 H 0.354 0.646 26 H 0.328 0.672 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.188 0.812 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.786 -4.828 0.265 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.077 4.077 10 C 0.023 3.977 11 H 0.104 0.896 12 N -0.368 5.368 13 C -0.057 4.057 14 C -0.084 4.084 15 C -0.110 4.110 16 C -0.257 4.257 17 S 0.309 5.691 18 N -0.256 5.256 19 C -0.074 4.074 20 C -0.150 4.150 21 C -0.074 4.074 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.039 0.961 25 H 0.169 0.831 26 H 0.140 0.860 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.205 0.795 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.381 -5.350 0.725 18.200 hybrid contribution -1.954 1.936 -0.128 2.754 sum 15.426 -3.413 0.596 15.810 Atomic orbital electron populations 1.69899 1.06278 1.27120 1.50169 1.24991 0.94675 0.99143 0.94220 0.86823 0.80433 0.83736 0.78577 1.20289 1.21245 1.19027 1.21013 0.88890 0.94589 1.52045 0.90671 1.20321 0.97746 0.92577 0.97037 1.20385 0.87422 0.95944 0.93953 0.89601 1.59246 1.17862 1.56360 1.03355 1.19825 0.97268 0.96102 0.92525 1.20921 0.92476 0.95894 0.99142 1.19918 0.94764 1.01692 0.94619 1.23353 0.98002 1.06299 0.98093 1.84709 1.06552 1.75333 1.02502 1.75854 1.17816 1.20735 1.11242 1.23928 0.88598 0.95318 0.99558 1.20364 0.95520 1.07474 0.91690 1.20526 0.91078 0.97693 0.98068 0.92540 0.96889 0.96082 0.83113 0.86029 0.84804 0.85193 0.79513 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.96 55.43 0.77 -25.46 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.53 -13.65 9.10 -34.44 -0.31 -13.97 16 8 H 0.08 2.07 7.39 -52.49 -0.39 1.68 16 9 C -0.04 -0.82 3.66 -27.88 -0.10 -0.92 16 10 C 0.13 2.38 2.96 -68.87 -0.20 2.18 16 11 H 0.09 1.56 7.95 -51.92 -0.41 1.15 16 12 N -0.84 -13.92 9.02 -5.65 -0.05 -13.97 16 13 C -0.05 -0.85 4.91 -105.14 -0.52 -1.37 16 14 C -0.06 -0.87 9.23 -39.86 -0.37 -1.23 16 15 C -0.09 -1.14 10.02 -39.93 -0.40 -1.54 16 16 C -0.14 -1.92 6.71 -38.41 -0.26 -2.18 16 17 S 0.16 2.08 23.86 -107.50 -2.56 -0.48 16 18 N -0.45 -6.18 11.90 30.97 0.37 -5.81 16 19 C 0.14 1.68 11.46 -16.19 -0.19 1.50 16 20 C -0.14 -1.93 6.12 -105.14 -0.64 -2.57 16 21 C -0.05 -0.72 9.65 -39.25 -0.38 -1.10 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.01 0.28 7.58 -51.93 -0.39 -0.12 16 24 H 0.02 0.47 7.19 -51.93 -0.37 0.10 16 25 H 0.35 6.30 7.90 -39.29 -0.31 5.99 16 26 H 0.33 4.99 7.29 -39.29 -0.29 4.70 16 27 H 0.13 1.69 6.61 -52.48 -0.35 1.34 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.13 1.66 7.98 -52.49 -0.42 1.25 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -29.41 270.57 -8.48 -37.88 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.94 Total: 6.95 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.47 Total: -19.32 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 1.09 Total: -45.24 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.56 Total: -0.48 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.41 -8.48 -37.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.719 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds