Wall clock time and date at job start Mon Mar 30 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38971 * 119.41875 * 279.99741 * 13 10 9 15 15 C 1.36709 * 120.15717 * 179.97438 * 14 13 10 16 16 C 1.38789 * 119.75403 * 0.02562 * 15 14 13 17 17 S 1.76510 * 133.55909 * 179.97438 * 16 15 14 18 18 N 1.69386 * 96.11985 * 180.02562 * 17 16 15 19 19 C 1.28725 * 108.98966 * 359.97438 * 18 17 16 20 20 C 1.40810 * 120.92037 * 0.02562 * 16 15 14 21 21 C 1.36037 * 119.42173 * 99.73070 * 13 10 9 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 26 26 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 27 27 H 1.08007 * 119.92147 * 359.97438 * 14 13 10 28 28 H 1.08001 * 120.12911 * 179.97438 * 15 14 13 29 29 H 1.08001 * 121.09404 * 180.02562 * 19 18 17 30 30 H 1.08001 * 119.89802 * 359.97438 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.3056 -2.3965 -0.9817 15 6 7.6690 -2.3938 -0.8807 16 6 8.2692 -2.6340 0.3474 17 16 9.9483 -2.7157 0.8854 18 7 9.6016 -3.0528 2.5088 19 6 8.3246 -3.1050 2.6623 20 6 7.4931 -2.8819 1.4959 21 6 6.0881 -2.8706 1.3563 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 2.6347 -3.3652 -1.3250 26 1 4.0322 -2.8162 -2.0400 27 1 5.8357 -2.2103 -1.9362 28 1 8.2769 -2.2064 -1.7535 29 1 7.8868 -3.3090 3.6283 30 1 5.4602 -3.0514 2.2162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:42 Heat of formation + Delta-G solvation = 21.888464 kcal Electronic energy + Delta-G solvation = -15055.927033 eV Core-core repulsion = 12554.971523 eV Total energy + Delta-G solvation = -2500.955510 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.01850 -38.40205 -36.38474 -34.45499 -32.10864 -31.08291 -30.42263 -26.40131 -25.11990 -23.82719 -22.84629 -20.89339 -19.30776 -18.90892 -17.17715 -17.06807 -16.67228 -16.33987 -15.41226 -15.26936 -15.05205 -14.89367 -14.69616 -14.21678 -14.11269 -13.44156 -13.15321 -12.80063 -12.62089 -12.32801 -12.10393 -11.92098 -11.71176 -11.55558 -11.24325 -10.80885 -10.75011 -9.91282 -9.43940 -8.83905 -8.29670 -6.33080 -0.50827 0.20182 0.39608 0.82050 1.17607 1.32792 1.36905 1.46090 2.33711 2.61969 3.06026 3.30545 3.61112 3.77785 4.11017 4.24712 4.29616 4.36774 4.57911 4.63362 4.78747 4.93158 4.96455 5.10082 5.24151 5.33367 5.45161 5.61456 5.67778 5.79544 6.22979 6.39265 6.72404 6.75386 7.32234 8.85910 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.034329 B = 0.005407 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.439103 B = 5177.045270 C = 5369.668100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.253 1.253 7 C -0.522 4.522 8 H 0.046 0.954 9 C -0.033 4.033 10 C 0.145 3.855 11 H 0.076 0.924 12 N -0.832 5.832 13 C -0.073 4.073 14 C -0.067 4.067 15 C -0.084 4.084 16 C -0.149 4.149 17 S 0.163 5.837 18 N -0.468 5.468 19 C 0.145 3.855 20 C -0.149 4.149 21 C -0.051 4.051 22 H 0.265 0.735 23 H 0.019 0.981 24 H 0.017 0.983 25 H 0.346 0.654 26 H 0.338 0.662 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.222 0.778 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.823 -4.531 0.266 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.177 1.177 7 C -0.560 4.560 8 H 0.064 0.936 9 C -0.072 4.072 10 C 0.034 3.966 11 H 0.094 0.906 12 N -0.361 5.361 13 C -0.076 4.076 14 C -0.090 4.090 15 C -0.107 4.107 16 C -0.269 4.269 17 S 0.314 5.686 18 N -0.278 5.278 19 C -0.065 4.065 20 C -0.161 4.161 21 C -0.073 4.073 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.159 0.841 26 H 0.151 0.849 27 H 0.164 0.836 28 H 0.174 0.826 29 H 0.238 0.762 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 19.456 -5.065 0.718 20.118 hybrid contribution -2.572 1.747 -0.114 3.112 sum 16.884 -3.318 0.604 17.217 Atomic orbital electron populations 1.70043 1.08073 1.27951 1.52529 1.25839 0.95354 1.02900 0.94400 0.85829 0.79446 0.79372 0.78987 1.19375 1.21496 1.17656 1.21339 0.91293 0.93283 1.50085 0.93582 1.20263 0.94643 0.95435 0.96854 1.20140 0.89192 0.93262 0.94055 0.90586 1.59233 1.17180 1.56179 1.03513 1.19654 0.95720 0.98416 0.93810 1.21077 0.92933 0.95760 0.99188 1.20194 0.94602 1.00636 0.95275 1.23663 0.98589 1.05994 0.98634 1.84662 1.06022 1.75406 1.02495 1.75880 1.18551 1.21835 1.11524 1.24367 0.87999 0.93694 1.00464 1.20553 0.95438 1.07712 0.92374 1.20676 0.91586 0.96920 0.98155 0.92622 0.96279 0.96510 0.84094 0.84948 0.83615 0.82594 0.76158 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.42 13.96 21.45 0.30 -56.12 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.94 42.41 27.47 68.60 1.88 44.30 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 7 C -0.52 -27.17 9.10 25.60 0.23 -26.94 16 8 H 0.05 2.61 7.39 -2.91 -0.02 2.59 16 9 C -0.03 -1.38 3.66 29.85 0.11 -1.27 16 10 C 0.15 5.00 2.96 44.17 0.13 5.13 16 11 H 0.08 2.74 7.95 -2.38 -0.02 2.72 16 12 N -0.83 -26.87 9.02 -171.80 -1.55 -28.41 16 13 C -0.07 -2.14 4.91 -20.20 -0.10 -2.24 16 14 C -0.07 -1.72 9.23 22.09 0.20 -1.51 16 15 C -0.08 -1.97 10.02 22.04 0.22 -1.75 16 16 C -0.15 -3.80 6.71 23.03 0.15 -3.64 16 17 S 0.16 3.96 23.86 -56.49 -1.35 2.61 16 18 N -0.47 -11.90 11.90 -55.95 -0.67 -12.57 16 19 C 0.14 3.18 11.46 86.87 1.00 4.18 16 20 C -0.15 -3.77 6.12 -20.20 -0.12 -3.89 16 21 C -0.05 -1.34 9.65 22.48 0.22 -1.12 16 22 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 23 H 0.02 0.78 7.58 -2.38 -0.02 0.76 16 24 H 0.02 0.72 7.19 -2.39 -0.02 0.70 16 25 H 0.35 12.32 7.90 -89.70 -0.71 11.61 16 26 H 0.34 9.76 7.29 -89.69 -0.65 9.10 16 27 H 0.15 3.29 6.61 -2.91 -0.02 3.27 16 28 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 29 H 0.22 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.15 3.36 7.98 -2.91 -0.02 3.34 16 Total: -1.00 -62.47 270.57 0.89 -61.58 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.23 Total: 20.53 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 2.50 Total: -31.91 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -1.92 Total: -97.10 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.30 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.35 Total: 2.61 kcal Total: -62.47 0.89 -61.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.467 kcal (2) G-P(sol) polarization free energy of solvation -62.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds