Wall clock time and date at job start Mon Mar 30 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38702 * 119.70261 * 299.73131 * 12 2 1 14 14 C 1.37730 * 119.97564 * 179.74115 * 13 12 2 15 15 C 1.39263 * 120.20178 * 0.53360 * 14 13 12 16 16 S 1.76193 * 131.17259 * 179.74448 * 15 14 13 17 17 C 1.75809 * 90.44943 * 179.97438 * 16 15 14 18 18 N 1.38001 * 124.81673 * 179.97438 * 17 16 15 19 19 N 1.28894 * 110.36480 * 0.02562 * 17 16 15 20 20 C 1.34811 * 117.87920 * 359.97438 * 19 17 16 21 21 C 1.37204 * 119.69859 * 120.00100 * 12 2 1 22 22 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.07998 * 120.01589 * 359.97438 * 13 12 2 27 27 H 1.07996 * 119.90006 * 180.27212 * 14 13 12 28 28 H 0.97006 * 119.99783 * 359.97438 * 18 17 16 29 29 H 0.96999 * 120.00305 * 179.97438 * 18 17 16 30 30 H 1.08002 * 119.78259 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 6 2.0323 -0.7105 -1.2304 13 6 1.6981 -2.0402 -1.4408 14 6 2.1497 -2.6935 -2.5660 15 6 2.9511 -2.0264 -3.4892 16 16 3.6823 -2.5702 -4.9971 17 6 4.3932 -0.9809 -5.2417 18 7 5.1788 -0.6265 -6.3194 19 7 4.0773 -0.1941 -4.2709 20 6 3.3000 -0.6881 -3.2864 21 6 2.8208 -0.0379 -2.1295 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7164 1.1670 3.4843 26 1 1.0808 -2.5619 -0.7244 27 1 1.8851 -3.7275 -2.7308 28 1 5.3741 -1.2771 -7.0120 29 1 5.5357 0.2730 -6.3845 30 1 3.0769 0.9959 -1.9502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114020.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:40 Heat of formation + Delta-G solvation = 45.196098 kcal Electronic energy + Delta-G solvation = -15078.060868 eV Core-core repulsion = 12578.116053 eV Total energy + Delta-G solvation = -2499.944815 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74239 -37.26510 -34.67597 -33.25548 -31.26505 -29.43159 -27.67068 -25.14061 -23.88775 -22.17037 -21.67588 -19.64409 -18.25568 -16.93500 -16.27374 -16.18582 -14.92092 -14.76597 -14.58674 -14.29865 -13.79430 -13.13896 -12.73006 -12.13872 -12.01418 -11.55817 -11.28118 -10.96390 -10.88096 -10.62894 -10.35898 -10.11798 -9.80661 -9.54550 -9.46150 -9.32097 -8.88407 -8.39048 -7.52637 -7.44521 -6.02522 -4.09395 1.09078 1.23124 1.83499 1.94603 2.93158 3.29038 3.36807 3.37556 3.41988 4.33818 4.47645 4.92398 5.24153 5.29057 5.73074 5.83860 6.06517 6.21529 6.47241 6.60468 6.80325 6.86111 6.91425 7.01550 7.13764 7.19916 7.29265 7.51477 7.70708 7.93135 8.07587 8.17152 8.36251 8.93297 9.55460 11.03234 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.005289 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.818730 B = 5293.032530 C = 5367.255367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.038 0.962 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.009 4.009 13 C -0.096 4.096 14 C -0.076 4.076 15 C -0.197 4.197 16 S 0.002 5.998 17 C 0.370 3.630 18 N -0.821 5.821 19 N -0.540 5.540 20 C 0.121 3.879 21 C -0.098 4.098 22 H 0.030 0.970 23 H 0.086 0.914 24 H 0.010 0.990 25 H 0.260 0.740 26 H 0.135 0.865 27 H 0.119 0.881 28 H 0.413 0.587 29 H 0.411 0.589 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -5.212 -14.808 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 H 0.056 0.944 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.011 4.011 13 C -0.117 4.117 14 C -0.099 4.099 15 C -0.316 4.316 16 S 0.247 5.753 17 C -0.010 4.010 18 N -0.373 5.373 19 N -0.266 5.266 20 C 0.004 3.996 21 C -0.119 4.119 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.153 0.847 27 H 0.137 0.863 28 H 0.243 0.757 29 H 0.243 0.757 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.685 -5.470 -15.232 16.849 hybrid contribution 0.385 0.082 1.178 1.242 sum 5.071 -5.388 -14.055 15.883 Atomic orbital electron populations 1.21788 0.97319 0.99433 1.00449 1.17955 0.93060 0.95642 0.88174 0.94382 1.21126 1.31338 1.12411 0.89718 0.92267 1.24951 0.95010 0.94962 0.98957 1.69897 1.36666 1.22790 1.23384 0.86518 0.78675 0.79734 0.83005 1.19720 1.21023 1.20994 1.20505 0.91814 0.93645 0.95170 1.21071 0.99947 0.94817 0.95824 1.20217 0.97324 0.98984 0.93394 1.23022 1.10236 0.98166 1.00133 1.84526 1.54415 1.14080 1.22329 1.23581 0.94539 0.91488 0.91350 1.41368 1.56046 1.17430 1.22498 1.66171 1.21602 1.34799 1.03990 1.18711 0.96438 0.90022 0.94451 1.20587 0.99582 1.00235 0.91520 0.95120 0.89499 0.97110 0.92956 0.84713 0.86305 0.75678 0.75698 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.79 37.16 0.33 -2.78 16 2 C 0.07 1.72 2.46 -92.92 -0.23 1.49 16 3 H 0.04 1.01 7.84 -51.93 -0.41 0.60 16 4 C -0.51 -13.54 8.22 -34.44 -0.28 -13.82 16 5 H 0.06 1.58 7.59 -52.49 -0.40 1.18 16 6 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 7 N -0.89 -24.81 11.33 55.43 0.63 -24.18 16 8 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C -0.01 -0.19 4.72 -104.83 -0.49 -0.69 16 13 C -0.10 -1.87 8.67 -39.60 -0.34 -2.21 16 14 C -0.08 -1.33 10.06 -39.39 -0.40 -1.73 16 15 C -0.20 -3.55 6.52 -38.62 -0.25 -3.80 16 16 S 0.00 0.03 23.39 -107.50 -2.51 -2.49 16 17 C 0.37 5.32 8.73 -88.91 -0.78 4.54 16 18 N -0.82 -7.58 9.05 30.47 0.28 -7.30 16 19 N -0.54 -9.77 10.61 -11.16 -0.12 -9.88 16 20 C 0.12 2.38 6.94 -84.90 -0.59 1.79 16 21 C -0.10 -2.04 9.71 -38.87 -0.38 -2.42 16 22 H 0.03 0.67 7.38 -51.93 -0.38 0.29 16 23 H 0.09 2.24 6.08 -51.93 -0.32 1.93 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.14 2.55 7.57 -52.49 -0.40 2.15 16 27 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.41 2.48 8.95 -40.82 -0.37 2.11 16 29 H 0.41 3.26 8.95 -40.82 -0.37 2.89 16 30 H 0.13 2.59 7.90 -52.49 -0.41 2.18 16 LS Contribution 272.14 15.07 4.10 4.10 Total: -1.00 -30.06 272.14 -9.19 -39.24 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.03 Total: 2.59 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.51 Total: -18.02 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.79 Total: -41.37 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.51 Total: -2.49 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.06 -9.19 -39.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114020.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.437 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds