Wall clock time and date at job start Mon Mar 30 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38702 * 119.70261 * 299.73131 * 12 2 1 14 14 C 1.37730 * 119.97564 * 179.74115 * 13 12 2 15 15 C 1.39263 * 120.20178 * 0.53360 * 14 13 12 16 16 S 1.76193 * 131.17259 * 179.74448 * 15 14 13 17 17 C 1.75809 * 90.44943 * 179.97438 * 16 15 14 18 18 N 1.38001 * 124.81673 * 179.97438 * 17 16 15 19 19 N 1.28894 * 110.36480 * 0.02562 * 17 16 15 20 20 C 1.34811 * 117.87920 * 359.97438 * 19 17 16 21 21 C 1.37204 * 119.69859 * 120.00100 * 12 2 1 22 22 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.07998 * 120.01589 * 359.97438 * 13 12 2 27 27 H 1.07996 * 119.90006 * 180.27212 * 14 13 12 28 28 H 0.97006 * 119.99783 * 359.97438 * 18 17 16 29 29 H 0.96999 * 120.00305 * 179.97438 * 18 17 16 30 30 H 1.08002 * 119.78259 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 6 2.0323 -0.7105 -1.2304 13 6 1.6981 -2.0402 -1.4408 14 6 2.1497 -2.6935 -2.5660 15 6 2.9511 -2.0264 -3.4892 16 16 3.6823 -2.5702 -4.9971 17 6 4.3932 -0.9809 -5.2417 18 7 5.1788 -0.6265 -6.3194 19 7 4.0773 -0.1941 -4.2709 20 6 3.3000 -0.6881 -3.2864 21 6 2.8208 -0.0379 -2.1295 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7164 1.1670 3.4843 26 1 1.0808 -2.5619 -0.7244 27 1 1.8851 -3.7275 -2.7308 28 1 5.3741 -1.2771 -7.0120 29 1 5.5357 0.2730 -6.3845 30 1 3.0769 0.9959 -1.9502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114020.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:40 Heat of formation + Delta-G solvation = 26.699482 kcal Electronic energy + Delta-G solvation = -15078.862941 eV Core-core repulsion = 12578.116053 eV Total energy + Delta-G solvation = -2500.746889 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.11801 -38.66087 -36.21332 -34.68882 -33.02665 -31.00022 -29.17275 -27.18690 -25.26929 -23.63340 -23.18489 -21.15863 -19.53194 -18.32158 -17.95709 -17.53990 -16.64095 -16.12492 -15.86360 -15.78272 -15.35083 -14.66191 -14.47483 -13.67326 -13.64396 -13.26334 -12.88461 -12.83022 -12.67352 -12.23911 -12.09321 -12.02110 -11.29611 -11.12460 -11.03605 -10.59921 -10.56976 -10.44731 -8.89536 -8.72240 -8.07623 -6.21710 -0.23275 0.06774 0.35370 0.65312 1.42972 1.45365 1.56398 1.60375 2.36014 2.45587 2.90450 3.20593 3.67813 3.90555 4.27409 4.41626 4.53798 4.69299 4.89114 5.03250 5.12962 5.20991 5.27305 5.40373 5.53339 5.69331 5.87022 5.97962 6.05469 6.10839 6.31622 6.38165 6.86534 7.05665 7.46124 8.97211 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.005289 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.818730 B = 5293.032530 C = 5367.255367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.071 3.929 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.277 1.277 12 C -0.024 4.024 13 C -0.113 4.113 14 C -0.059 4.059 15 C -0.224 4.224 16 S 0.076 5.924 17 C 0.374 3.626 18 N -0.791 5.791 19 N -0.585 5.585 20 C 0.116 3.884 21 C -0.122 4.122 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.023 0.977 25 H 0.262 0.738 26 H 0.136 0.864 27 H 0.155 0.845 28 H 0.432 0.568 29 H 0.421 0.579 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 -7.410 -16.849 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.203 1.203 12 C -0.027 4.027 13 C -0.134 4.134 14 C -0.081 4.081 15 C -0.343 4.343 16 S 0.321 5.679 17 C -0.006 4.006 18 N -0.346 5.346 19 N -0.313 5.313 20 C -0.001 4.001 21 C -0.144 4.144 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.154 0.846 27 H 0.172 0.828 28 H 0.266 0.734 29 H 0.254 0.746 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.755 -7.683 -17.346 19.825 hybrid contribution 0.186 0.760 1.555 1.741 sum 5.941 -6.923 -15.791 18.237 Atomic orbital electron populations 1.21618 0.96760 0.99769 0.99717 1.17797 0.93595 0.93941 0.89459 0.97876 1.21374 1.31170 1.12323 0.90827 0.92705 1.25708 0.95245 0.95651 1.01763 1.70026 1.37646 1.23994 1.23989 0.85539 0.78219 0.78654 0.79460 1.19209 1.20974 1.20264 1.20211 0.93252 0.94762 0.94448 1.21045 1.01159 0.93975 0.97250 1.20499 0.95538 1.00182 0.91914 1.23439 1.10461 0.97995 1.02383 1.84218 1.52808 1.12081 1.18822 1.23986 0.93569 0.91812 0.91207 1.41471 1.53591 1.18539 1.20995 1.66177 1.23645 1.36253 1.05185 1.18729 0.96332 0.90850 0.94239 1.20469 1.01011 0.99929 0.93000 0.94116 0.92058 0.95826 0.92905 0.84614 0.82779 0.73395 0.74554 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.79 71.98 0.63 -5.26 16 2 C 0.07 3.64 2.46 -12.29 -0.03 3.61 16 3 H 0.00 0.18 7.84 -2.39 -0.02 0.16 16 4 C -0.52 -28.50 8.22 25.60 0.21 -28.29 16 5 H 0.05 2.99 7.59 -2.91 -0.02 2.97 16 6 C 0.02 0.83 5.31 84.66 0.45 1.27 16 7 N -0.92 -52.77 11.33 21.45 0.24 -52.53 16 8 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 C -0.02 -1.09 4.72 -20.00 -0.09 -1.18 16 13 C -0.11 -4.41 8.67 22.26 0.19 -4.22 16 14 C -0.06 -1.94 10.06 22.40 0.23 -1.71 16 15 C -0.22 -7.61 6.52 22.89 0.15 -7.46 16 16 S 0.08 1.84 23.39 -56.49 -1.32 0.52 16 17 C 0.37 9.66 8.73 179.75 1.57 11.23 16 18 N -0.79 -11.65 9.05 -57.52 -0.52 -12.17 16 19 N -0.58 -20.49 10.61 -189.23 -2.01 -22.50 16 20 C 0.12 4.55 6.94 39.76 0.28 4.83 16 21 C -0.12 -5.34 9.71 22.73 0.22 -5.12 16 22 H 0.04 1.84 7.38 -2.39 -0.02 1.82 16 23 H 0.06 3.29 6.08 -2.39 -0.01 3.27 16 24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 26 H 0.14 5.13 7.57 -2.91 -0.02 5.11 16 27 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.43 3.20 8.95 -92.70 -0.83 2.37 16 29 H 0.42 5.24 8.95 -92.71 -0.83 4.41 16 30 H 0.11 4.97 7.90 -2.91 -0.02 4.95 16 Total: -1.00 -66.55 272.14 1.75 -64.80 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.47 Total: 8.63 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 3.80 Total: -32.30 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.29 Total: -87.20 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.32 Total: 0.52 kcal Total: -66.55 1.75 -64.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114020.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.500 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds