Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47245 * 2 1 4 4 N 1.40093 * 126.03621 * 269.97415 * 3 2 1 5 5 C 1.30835 * 108.20440 * 180.02562 * 4 3 2 6 6 C 1.50702 * 125.89924 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47017 * 304.97752 * 6 5 4 8 8 H 1.08005 * 119.99612 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00239 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47626 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47220 * 119.99867 * 11 9 7 14 14 H 1.48502 * 109.47181 * 239.99855 * 11 9 7 15 15 C 1.39875 * 108.20384 * 359.78361 * 5 4 3 16 16 C 1.34949 * 126.04157 * 89.99799 * 3 2 1 17 17 C 1.50703 * 126.12355 * 359.94294 * 16 3 2 18 18 F 1.39905 * 109.47157 * 89.99996 * 17 16 3 19 19 F 1.39900 * 109.47159 * 330.00297 * 17 16 3 20 20 F 1.39897 * 109.47274 * 209.99988 * 17 16 3 21 21 H 1.09002 * 109.46522 * 60.00069 * 1 2 3 22 22 H 1.08994 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46911 * 300.00292 * 1 2 3 24 24 H 1.09000 * 109.47631 * 239.99896 * 2 1 3 25 25 H 1.09006 * 109.47201 * 119.99670 * 2 1 3 26 26 H 1.08997 * 109.46995 * 64.97112 * 6 5 4 27 27 H 1.08999 * 109.47439 * 184.97894 * 6 5 4 28 28 H 0.97001 * 120.00249 * 180.02562 * 10 9 7 29 29 H 1.07999 * 126.03690 * 180.23507 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1581 -1.1329 5 6 2.7091 3.3322 -0.7322 6 6 3.1142 4.4777 -1.6237 7 6 4.1859 4.0170 -2.5779 8 1 4.5386 2.9968 -2.5419 9 6 4.7160 4.8978 -3.4966 10 7 4.2861 6.1399 -3.5407 11 14 6.0438 4.3265 -4.6797 12 1 6.3492 2.8953 -4.4276 13 1 5.5674 4.4928 -6.0764 14 1 7.2711 5.1374 -4.4755 15 6 2.7071 3.3425 0.6665 16 6 2.2830 2.1298 1.0912 17 6 2.1279 1.6951 2.5258 18 9 3.3232 1.1198 2.9706 19 9 1.0953 0.7559 2.6195 20 9 1.8215 2.8058 3.3192 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2482 4.8220 -2.1890 27 1 3.4981 5.2951 -1.0133 28 1 4.6587 6.7595 -4.1873 29 1 2.9953 4.1713 1.2962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261341733.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = -83.226249 kcal Electronic energy + Delta-G solvation = -18185.283197 eV Core-core repulsion = 14695.159960 eV Total energy + Delta-G solvation = -3490.123237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.24253 -47.79612 -47.69420 -40.88770 -34.73357 -33.02717 -31.22405 -29.89557 -27.62331 -25.81513 -23.94913 -22.55809 -20.71347 -19.68403 -18.60157 -18.17771 -17.58818 -16.28451 -15.54029 -15.02828 -14.73951 -14.56304 -14.48499 -14.25071 -14.13653 -13.88027 -13.80181 -13.25387 -12.67937 -12.64541 -12.21131 -12.14697 -11.81793 -11.45250 -11.22953 -10.78261 -10.72310 -10.16858 -9.77781 -9.43989 -8.82743 -8.44269 -8.18138 -6.04967 -4.06489 1.78800 2.31925 2.83448 3.29454 3.31790 3.39486 3.45975 3.63938 4.03353 4.32758 4.46235 4.63201 4.99507 5.19023 5.29949 5.36701 5.51157 5.71427 5.88585 6.02742 6.05667 6.30781 7.07552 7.14933 7.45061 7.48994 7.91472 8.18079 8.35135 8.96984 9.56786 11.06143 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.005910 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.980325 B = 4736.991393 C = 5070.294811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.361 5.361 4 N -0.252 5.252 5 C 0.116 3.884 6 C 0.087 3.913 7 C -0.508 4.508 8 H 0.060 0.940 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C -0.197 4.197 16 C -0.040 4.040 17 C 0.542 3.458 18 F -0.172 7.172 19 F -0.178 7.178 20 F -0.165 7.165 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.262 0.738 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 -10.343 11.525 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.145 5.145 4 N -0.074 5.074 5 C -0.050 4.050 6 C 0.048 3.952 7 C -0.547 4.547 8 H 0.078 0.922 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.228 4.228 16 C -0.167 4.167 17 C 0.486 3.514 18 F -0.153 7.153 19 F -0.159 7.159 20 F -0.146 7.146 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.510 -11.105 10.471 16.593 hybrid contribution 0.888 0.119 0.343 0.960 sum -5.622 -10.986 10.814 16.408 Atomic orbital electron populations 1.22217 0.94143 1.02894 1.03514 1.21710 0.95518 0.78063 1.04270 1.48762 1.51292 1.11964 1.02445 1.77646 1.21116 1.04338 1.04306 1.23448 0.93884 0.94774 0.92852 1.17940 0.97098 0.87723 0.92419 1.21070 1.19924 0.97246 1.16438 0.92205 1.24969 0.97071 0.94849 0.97417 1.69950 1.42983 1.04108 1.36407 0.86444 0.81461 0.78857 0.80734 1.19752 1.20950 1.20970 1.21410 1.08923 0.96443 0.96061 1.20604 1.12597 0.96138 0.87388 1.17371 0.73866 0.74718 0.85486 1.93244 1.46496 1.84922 1.90678 1.93172 1.59672 1.66315 1.96781 1.93220 1.92888 1.52758 1.75717 0.91346 0.90673 0.91783 0.88276 0.89575 0.93924 0.93805 0.92841 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.04 37.16 0.37 -1.51 15 2 C 0.13 1.62 6.33 -4.04 -0.03 1.60 15 3 N -0.36 -6.37 3.61 -57.14 -0.21 -6.58 15 4 N -0.25 -5.52 12.54 33.67 0.42 -5.10 15 5 C 0.12 2.60 6.43 -82.40 -0.53 2.07 15 6 C 0.09 2.22 5.55 -29.03 -0.16 2.06 15 7 C -0.51 -14.29 9.07 -34.44 -0.31 -14.60 15 8 H 0.06 1.71 7.74 -52.48 -0.41 1.30 15 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 10 N -0.90 -26.12 13.29 55.43 0.74 -25.39 15 11 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 15 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 15 C -0.20 -3.75 10.30 -40.01 -0.41 -4.16 15 16 C -0.04 -0.68 6.39 -82.26 -0.53 -1.21 15 17 C 0.54 7.63 3.33 36.01 0.12 7.75 15 18 F -0.17 -2.42 17.30 2.25 0.04 -2.38 15 19 F -0.18 -2.24 13.69 2.25 0.03 -2.21 15 20 F -0.16 -2.27 17.02 2.25 0.04 -2.23 15 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.06 0.74 6.72 -51.93 -0.35 0.39 15 24 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.09 0.95 6.99 -51.93 -0.36 0.59 15 26 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.04 1.13 8.12 -51.93 -0.42 0.71 15 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 29 H 0.15 2.58 8.06 -52.49 -0.42 2.16 15 LS Contribution 269.72 15.07 4.06 4.06 Total: -1.00 -30.07 269.72 -4.26 -34.33 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: -2.79 Total: -4.70 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.57 Total: -6.46 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.95 Total: -37.06 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.07 -4.26 -34.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341733.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.900 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds