Wall clock time and date at job start Mon Mar 30 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47245 * 2 1 4 4 N 1.40093 * 126.03621 * 269.97415 * 3 2 1 5 5 C 1.30835 * 108.20440 * 180.02562 * 4 3 2 6 6 C 1.50702 * 125.89924 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47017 * 304.97752 * 6 5 4 8 8 H 1.08005 * 119.99612 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00239 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47626 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47220 * 119.99867 * 11 9 7 14 14 H 1.48502 * 109.47181 * 239.99855 * 11 9 7 15 15 C 1.39875 * 108.20384 * 359.78361 * 5 4 3 16 16 C 1.34949 * 126.04157 * 89.99799 * 3 2 1 17 17 C 1.50703 * 126.12355 * 359.94294 * 16 3 2 18 18 F 1.39905 * 109.47157 * 89.99996 * 17 16 3 19 19 F 1.39900 * 109.47159 * 330.00297 * 17 16 3 20 20 F 1.39897 * 109.47274 * 209.99988 * 17 16 3 21 21 H 1.09002 * 109.46522 * 60.00069 * 1 2 3 22 22 H 1.08994 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46911 * 300.00292 * 1 2 3 24 24 H 1.09000 * 109.47631 * 239.99896 * 2 1 3 25 25 H 1.09006 * 109.47201 * 119.99670 * 2 1 3 26 26 H 1.08997 * 109.46995 * 64.97112 * 6 5 4 27 27 H 1.08999 * 109.47439 * 184.97894 * 6 5 4 28 28 H 0.97001 * 120.00249 * 180.02562 * 10 9 7 29 29 H 1.07999 * 126.03690 * 180.23507 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1581 -1.1329 5 6 2.7091 3.3322 -0.7322 6 6 3.1142 4.4777 -1.6237 7 6 4.1859 4.0170 -2.5779 8 1 4.5386 2.9968 -2.5419 9 6 4.7160 4.8978 -3.4966 10 7 4.2861 6.1399 -3.5407 11 14 6.0438 4.3265 -4.6797 12 1 6.3492 2.8953 -4.4276 13 1 5.5674 4.4928 -6.0764 14 1 7.2711 5.1374 -4.4755 15 6 2.7071 3.3425 0.6665 16 6 2.2830 2.1298 1.0912 17 6 2.1279 1.6951 2.5258 18 9 3.3232 1.1198 2.9706 19 9 1.0953 0.7559 2.6195 20 9 1.8215 2.8058 3.3192 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.2482 4.8220 -2.1890 27 1 3.4981 5.2951 -1.0133 28 1 4.6587 6.7595 -4.1873 29 1 2.9953 4.1713 1.2962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261341733.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:29 Heat of formation + Delta-G solvation = -101.203649 kcal Electronic energy + Delta-G solvation = -18186.062756 eV Core-core repulsion = 14695.159960 eV Total energy + Delta-G solvation = -3490.902796 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.36494 -48.88789 -48.82393 -42.38317 -36.20892 -34.89691 -32.74818 -31.46418 -29.30682 -27.10209 -25.73696 -23.96108 -22.02578 -21.18867 -19.72969 -19.35999 -18.98011 -18.37099 -16.92917 -16.54159 -16.20649 -15.99790 -15.63222 -15.36338 -15.23939 -15.00074 -14.94991 -14.65428 -14.32539 -14.17868 -13.89816 -13.58815 -13.14374 -12.96742 -12.67450 -12.58290 -12.25958 -11.94733 -11.69240 -11.40401 -10.63994 -10.39374 -9.70449 -8.20766 -6.30335 0.36645 1.03019 1.41046 1.41082 1.53816 1.60726 1.66564 2.40429 2.44103 2.87980 3.12910 3.17355 3.45340 4.01091 4.02011 4.23228 4.31881 4.45947 4.68525 4.76476 4.84061 5.15803 5.25408 5.40704 5.54210 5.72482 5.81643 6.14035 6.64597 6.78960 7.36967 8.90683 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.005910 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.980325 B = 4736.991393 C = 5070.294811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.110 3.890 3 N -0.350 5.350 4 N -0.284 5.284 5 C 0.089 3.911 6 C 0.095 3.905 7 C -0.525 4.525 8 H 0.049 0.951 9 C 0.009 3.991 10 N -0.926 5.926 11 Si 0.965 3.035 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.273 1.273 15 C -0.214 4.214 16 C -0.028 4.028 17 C 0.557 3.443 18 F -0.167 7.167 19 F -0.164 7.164 20 F -0.159 7.159 21 H 0.049 0.951 22 H 0.111 0.889 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.017 0.983 27 H 0.033 0.967 28 H 0.267 0.733 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -12.158 12.452 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.134 5.134 4 N -0.107 5.107 5 C -0.075 4.075 6 C 0.056 3.944 7 C -0.564 4.564 8 H 0.068 0.932 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.789 3.211 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.199 1.199 15 C -0.244 4.244 16 C -0.157 4.157 17 C 0.501 3.499 18 F -0.148 7.148 19 F -0.145 7.145 20 F -0.141 7.141 21 H 0.068 0.932 22 H 0.129 0.871 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.131 0.869 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.436 -12.930 11.404 18.403 hybrid contribution 0.785 0.585 0.103 0.984 sum -5.650 -12.346 11.507 17.798 Atomic orbital electron populations 1.22188 0.92464 1.04922 1.02452 1.22249 0.96909 0.75746 1.06001 1.49119 1.49692 1.13031 1.01565 1.77497 1.21882 1.04691 1.06662 1.22972 0.95977 0.94497 0.94067 1.17600 0.95539 0.88930 0.92292 1.21294 1.20787 0.96875 1.17441 0.93232 1.25807 0.99238 0.94884 0.99007 1.70050 1.44188 1.05131 1.37245 0.85404 0.78765 0.78406 0.78483 1.19556 1.20185 1.19885 1.21505 1.10089 0.98122 0.94696 1.20940 1.10561 0.95300 0.88938 1.16875 0.74301 0.75036 0.83699 1.93261 1.46397 1.84797 1.90381 1.93206 1.59007 1.65671 1.96597 1.93241 1.92857 1.52717 1.75247 0.93188 0.87090 0.92009 0.87568 0.86867 0.96530 0.94853 0.92422 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.04 71.98 0.72 -2.45 15 2 C 0.11 2.56 6.33 86.38 0.55 3.11 15 3 N -0.35 -11.91 3.61 -334.69 -1.21 -13.12 15 4 N -0.28 -12.55 12.54 -47.38 -0.59 -13.14 15 5 C 0.09 4.10 6.43 43.10 0.28 4.38 15 6 C 0.10 5.10 5.55 29.10 0.16 5.26 15 7 C -0.53 -30.38 9.07 25.60 0.23 -30.15 15 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 15 9 C 0.01 0.52 5.46 84.65 0.46 0.99 15 10 N -0.93 -55.03 13.29 21.45 0.28 -54.75 15 11 Si 0.96 44.71 29.54 68.60 2.03 46.73 15 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 13 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 15 C -0.21 -8.09 10.30 21.99 0.23 -7.87 15 16 C -0.03 -0.92 6.39 41.40 0.26 -0.66 15 17 C 0.56 14.16 3.33 71.24 0.24 14.40 15 18 F -0.17 -4.20 17.30 44.97 0.78 -3.42 15 19 F -0.16 -3.55 13.69 44.97 0.62 -2.93 15 20 F -0.16 -3.99 17.02 44.97 0.77 -3.23 15 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.06 1.25 6.72 -2.39 -0.02 1.23 15 24 H 0.11 2.36 8.14 -2.39 -0.02 2.34 15 25 H 0.11 2.06 6.99 -2.38 -0.02 2.05 15 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 27 H 0.03 1.80 8.12 -2.39 -0.02 1.78 15 28 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 29 H 0.17 5.65 8.06 -2.91 -0.02 5.63 15 Total: -1.00 -65.25 269.72 6.97 -58.28 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: 1.17 Total: -1.43 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 3.13 Total: -12.99 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.52 Total: -81.01 kcal Atomic # 9 Polarization: -11.74 SS G_CDS: 2.16 Total: -9.58 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.25 6.97 -58.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261341733.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.926 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds