Wall clock time and date at job start Mon Mar 30 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46951 * 2 1 4 4 N 1.46499 * 109.47473 * 120.00156 * 2 1 3 5 5 N 1.28480 * 124.85806 * 300.02691 * 4 2 1 6 6 C 1.32761 * 109.92842 * 179.97438 * 5 4 2 7 7 C 1.41419 * 126.56379 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99894 * 186.17125 * 7 6 5 9 9 C 1.39854 * 120.00603 * 6.16240 * 7 6 5 10 10 N 1.30898 * 119.99360 * 6.40619 * 9 7 6 11 11 Si 1.86799 * 120.00470 * 186.39746 * 9 7 6 12 12 H 1.48498 * 109.47397 * 265.01902 * 11 9 7 13 13 H 1.48503 * 109.46756 * 25.01987 * 11 9 7 14 14 H 1.48497 * 109.46955 * 145.01373 * 11 9 7 15 15 C 1.42229 * 106.86162 * 0.24394 * 6 5 4 16 16 C 1.35072 * 105.55309 * 359.60963 * 15 6 5 17 17 C 1.50701 * 126.31411 * 180.12902 * 16 15 6 18 18 F 1.39898 * 109.47069 * 270.30659 * 17 16 15 19 19 F 1.39897 * 109.46757 * 30.30236 * 17 16 15 20 20 F 1.39899 * 109.47009 * 150.30426 * 17 16 15 21 21 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47051 * 299.99558 * 1 2 3 23 23 H 1.08999 * 109.47091 * 60.00034 * 1 2 3 24 24 H 1.08999 * 109.47051 * 240.00442 * 2 1 3 25 25 H 1.09001 * 109.46918 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47195 * 299.99902 * 3 2 1 27 27 H 1.08999 * 109.46882 * 60.00339 * 3 2 1 28 28 H 0.96999 * 119.99284 * 180.02562 * 10 9 7 29 29 H 1.07999 * 127.22439 * 179.74070 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7658 -0.3343 2.4044 6 6 2.3544 -1.1672 3.2543 7 6 2.3082 -1.1020 4.6662 8 1 2.9085 -1.7773 5.2579 9 6 1.4854 -0.1630 5.2964 10 7 0.6653 0.5695 4.5864 11 14 1.5566 0.0457 7.1514 12 1 0.4975 -0.7812 7.7836 13 1 2.8868 -0.3897 7.6477 14 1 1.3423 1.4738 7.4974 15 6 3.0454 -2.1339 2.4727 16 6 2.8030 -1.8002 1.1865 17 6 3.3136 -2.5215 -0.0342 18 9 4.5486 -1.9832 -0.4113 19 9 3.4672 -3.8810 0.2578 20 9 2.3992 -2.3699 -1.0820 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 0.0949 1.2210 5.0235 29 1 3.6377 -2.9624 2.8321 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261352421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:38 Heat of formation + Delta-G solvation = -84.446153 kcal Electronic energy + Delta-G solvation = -18787.585095 eV Core-core repulsion = 15297.408959 eV Total energy + Delta-G solvation = -3490.176136 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.76792 -47.34846 -47.20330 -40.81117 -35.05677 -33.13498 -30.27856 -29.47665 -26.85033 -25.81255 -25.00640 -21.46263 -20.34421 -19.51748 -18.15220 -17.95093 -17.70643 -15.85591 -15.04062 -14.64615 -14.41244 -14.28274 -14.06236 -13.86424 -13.67301 -13.41335 -13.38877 -12.99533 -12.65255 -12.30094 -11.90902 -11.75832 -11.50114 -11.17523 -10.88422 -10.86260 -10.71706 -10.34295 -10.00817 -9.25310 -8.68563 -7.89488 -7.63659 -6.38698 -4.23775 2.84202 3.05781 3.12277 3.22146 3.26575 3.63567 4.15029 4.24859 4.33902 4.60911 4.88233 5.11317 5.38931 5.49223 5.59566 5.89447 5.99172 6.07207 6.20990 6.38695 6.62076 6.71773 6.81059 7.02349 7.35033 7.56151 8.04966 8.53351 8.83894 9.13753 10.00799 10.60267 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.008140 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.886840 B = 3439.156519 C = 4108.729857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 C -0.156 4.156 4 N -0.292 5.292 5 N -0.286 5.286 6 C 0.190 3.810 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.075 3.925 10 N -0.782 5.782 11 Si 0.906 3.094 12 H -0.274 1.274 13 H -0.264 1.264 14 H -0.281 1.281 15 C -0.225 4.225 16 C -0.121 4.121 17 C 0.543 3.457 18 F -0.182 7.182 19 F -0.173 7.173 20 F -0.186 7.186 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.269 0.731 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 -1.251 -8.367 8.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.039 3.961 3 C -0.214 4.214 4 N -0.078 5.078 5 N -0.119 5.119 6 C 0.044 3.956 7 C -0.489 4.489 8 H 0.100 0.900 9 C -0.143 4.143 10 N -0.410 5.410 11 Si 0.731 3.269 12 H -0.200 1.200 13 H -0.189 1.189 14 H -0.206 1.206 15 C -0.259 4.259 16 C -0.247 4.247 17 C 0.488 3.512 18 F -0.164 7.164 19 F -0.155 7.155 20 F -0.168 7.168 21 H 0.074 0.926 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.624 -0.042 -8.635 8.658 hybrid contribution 0.612 -0.786 0.647 1.188 sum 1.235 -0.828 -7.988 8.125 Atomic orbital electron populations 1.22034 0.93629 1.02520 1.02954 1.21410 0.95846 0.93907 0.84908 1.22074 1.01265 0.95044 1.02994 1.45685 1.36685 1.18810 1.06649 1.74710 1.26303 1.24879 0.86023 1.19292 0.92867 0.89467 0.93998 1.18512 1.24598 1.17776 0.88006 0.89995 1.25726 0.94063 0.94852 0.99691 1.69933 1.16966 1.17575 1.36494 0.86347 0.79295 0.77843 0.83373 1.20010 1.18854 1.20593 1.21454 1.09775 1.04551 0.90163 1.20774 1.11048 0.99521 0.93354 1.17559 0.74864 0.76966 0.81850 1.93188 1.44814 1.86030 1.92338 1.93162 1.95581 1.33339 1.93408 1.93060 1.67283 1.95073 1.61352 0.92607 0.90305 0.91846 0.88674 0.92642 0.91721 0.90462 0.92004 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.36 37.15 0.35 -2.24 15 2 C 0.14 2.58 3.34 -67.93 -0.23 2.35 15 3 C -0.16 -2.58 9.37 37.16 0.35 -2.23 15 4 N -0.29 -6.69 3.07 -50.53 -0.15 -6.84 15 5 N -0.29 -7.62 9.98 32.34 0.32 -7.30 15 6 C 0.19 5.19 6.75 -84.72 -0.57 4.62 15 7 C -0.45 -12.35 9.41 -37.77 -0.36 -12.70 15 8 H 0.08 2.12 7.85 -52.48 -0.41 1.70 15 9 C 0.08 1.98 5.49 -17.35 -0.10 1.89 15 10 N -0.78 -21.45 12.04 55.54 0.67 -20.78 15 11 Si 0.91 19.56 29.56 -169.99 -5.03 14.53 15 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 13 H -0.26 -5.61 7.11 56.52 0.40 -5.20 15 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 15 C -0.23 -5.45 10.58 -39.18 -0.41 -5.86 15 16 C -0.12 -2.69 6.38 -81.92 -0.52 -3.21 15 17 C 0.54 10.14 3.38 36.01 0.12 10.27 15 18 F -0.18 -3.28 17.30 2.25 0.04 -3.24 15 19 F -0.17 -3.14 17.03 2.25 0.04 -3.10 15 20 F -0.19 -3.20 14.51 2.25 0.03 -3.17 15 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.10 1.58 5.32 -51.93 -0.28 1.30 15 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.08 1.46 8.14 -51.93 -0.42 1.03 15 28 H 0.27 6.82 8.30 -40.82 -0.34 6.48 15 29 H 0.13 2.93 8.06 -52.49 -0.42 2.51 15 LS Contribution 267.25 15.07 4.03 4.03 Total: -1.00 -29.03 267.25 -4.20 -33.23 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -2.78 Total: -0.23 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.37 Total: -7.13 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.84 Total: -34.93 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 0.11 Total: -9.50 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.03 -4.20 -33.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261352421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.213 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds