Wall clock time and date at job start Mon Mar 30 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46951 * 2 1 4 4 N 1.46499 * 109.47473 * 120.00156 * 2 1 3 5 5 N 1.28480 * 124.85806 * 300.02691 * 4 2 1 6 6 C 1.32761 * 109.92842 * 179.97438 * 5 4 2 7 7 C 1.41419 * 126.56379 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99894 * 186.17125 * 7 6 5 9 9 C 1.39854 * 120.00603 * 6.16240 * 7 6 5 10 10 N 1.30898 * 119.99360 * 6.40619 * 9 7 6 11 11 Si 1.86799 * 120.00470 * 186.39746 * 9 7 6 12 12 H 1.48498 * 109.47397 * 265.01902 * 11 9 7 13 13 H 1.48503 * 109.46756 * 25.01987 * 11 9 7 14 14 H 1.48497 * 109.46955 * 145.01373 * 11 9 7 15 15 C 1.42229 * 106.86162 * 0.24394 * 6 5 4 16 16 C 1.35072 * 105.55309 * 359.60963 * 15 6 5 17 17 C 1.50701 * 126.31411 * 180.12902 * 16 15 6 18 18 F 1.39898 * 109.47069 * 270.30659 * 17 16 15 19 19 F 1.39897 * 109.46757 * 30.30236 * 17 16 15 20 20 F 1.39899 * 109.47009 * 150.30426 * 17 16 15 21 21 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47051 * 299.99558 * 1 2 3 23 23 H 1.08999 * 109.47091 * 60.00034 * 1 2 3 24 24 H 1.08999 * 109.47051 * 240.00442 * 2 1 3 25 25 H 1.09001 * 109.46918 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47195 * 299.99902 * 3 2 1 27 27 H 1.08999 * 109.46882 * 60.00339 * 3 2 1 28 28 H 0.96999 * 119.99284 * 180.02562 * 10 9 7 29 29 H 1.07999 * 127.22439 * 179.74070 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7658 -0.3343 2.4044 6 6 2.3544 -1.1672 3.2543 7 6 2.3082 -1.1020 4.6662 8 1 2.9085 -1.7773 5.2579 9 6 1.4854 -0.1630 5.2964 10 7 0.6653 0.5695 4.5864 11 14 1.5566 0.0457 7.1514 12 1 0.4975 -0.7812 7.7836 13 1 2.8868 -0.3897 7.6477 14 1 1.3423 1.4738 7.4974 15 6 3.0454 -2.1339 2.4727 16 6 2.8030 -1.8002 1.1865 17 6 3.3136 -2.5215 -0.0342 18 9 4.5486 -1.9832 -0.4113 19 9 3.4672 -3.8810 0.2578 20 9 2.3992 -2.3699 -1.0820 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 0.0949 1.2210 5.0235 29 1 3.6377 -2.9624 2.8321 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261352421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:37 Heat of formation + Delta-G solvation = -101.271094 kcal Electronic energy + Delta-G solvation = -18788.314679 eV Core-core repulsion = 15297.408959 eV Total energy + Delta-G solvation = -3490.905721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.25952 -48.81545 -48.69181 -42.64604 -36.64964 -35.03393 -32.08479 -31.29972 -28.20634 -27.73054 -26.65217 -23.15990 -22.12363 -21.19499 -19.75004 -19.57065 -19.26110 -17.68037 -16.77504 -16.32927 -16.13856 -15.84917 -15.53465 -15.33733 -15.14143 -14.88146 -14.87362 -14.72703 -14.32992 -13.83648 -13.61844 -13.09145 -13.00928 -12.88022 -12.62142 -12.52695 -12.29877 -11.95168 -11.80719 -11.15638 -10.61043 -9.77294 -9.55191 -8.34786 -6.27748 1.06349 1.41135 1.45485 1.46607 1.59287 2.04021 2.29049 2.34680 2.71275 3.09073 3.34671 3.54265 3.67005 4.00354 4.09590 4.49833 4.66934 4.67427 4.80388 4.82606 4.97810 5.10635 5.23572 5.30511 5.38338 5.65996 6.24434 6.56623 6.85055 7.12320 8.08038 8.65890 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.008140 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.886840 B = 3439.156519 C = 4108.729857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.125 3.875 3 C -0.148 4.148 4 N -0.292 5.292 5 N -0.311 5.311 6 C 0.151 3.849 7 C -0.486 4.486 8 H 0.085 0.915 9 C 0.028 3.972 10 N -0.819 5.819 11 Si 0.984 3.016 12 H -0.267 1.267 13 H -0.258 1.258 14 H -0.275 1.275 15 C -0.249 4.249 16 C -0.117 4.117 17 C 0.559 3.441 18 F -0.174 7.174 19 F -0.167 7.167 20 F -0.172 7.172 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.108 0.892 24 H 0.119 0.881 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.274 0.726 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -1.224 -9.393 9.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.025 3.975 3 C -0.206 4.206 4 N -0.079 5.079 5 N -0.145 5.145 6 C 0.005 3.995 7 C -0.524 4.524 8 H 0.103 0.897 9 C -0.186 4.186 10 N -0.447 5.447 11 Si 0.806 3.194 12 H -0.192 1.192 13 H -0.182 1.182 14 H -0.200 1.200 15 C -0.282 4.282 16 C -0.245 4.245 17 C 0.503 3.497 18 F -0.155 7.155 19 F -0.148 7.148 20 F -0.154 7.154 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.127 0.873 24 H 0.137 0.863 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.764 -0.019 -9.684 9.714 hybrid contribution 0.565 -0.801 0.815 1.275 sum 1.329 -0.820 -8.868 9.004 Atomic orbital electron populations 1.21986 0.92545 1.02203 1.03576 1.21950 0.96858 0.94825 0.83860 1.22031 1.00883 0.93968 1.03677 1.46146 1.35951 1.18884 1.06882 1.74611 1.26825 1.25559 0.87493 1.19721 0.94177 0.90849 0.94748 1.18890 1.25736 1.19006 0.88783 0.89693 1.26631 0.93167 0.94030 1.04803 1.70041 1.17759 1.18269 1.38665 0.85168 0.79541 0.77918 0.76813 1.19208 1.18189 1.19998 1.21636 1.10686 1.05033 0.90837 1.21165 1.09798 0.99065 0.94447 1.16989 0.75077 0.76766 0.80857 1.93208 1.44223 1.85994 1.92088 1.93182 1.95542 1.32689 1.93402 1.93083 1.66911 1.95010 1.60377 0.93375 0.93489 0.87325 0.86320 0.93141 0.87229 0.93498 0.91639 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.36 71.98 0.67 -4.01 15 2 C 0.13 4.36 3.34 44.99 0.15 4.51 15 3 C -0.15 -4.66 9.37 71.98 0.67 -3.98 15 4 N -0.29 -13.33 3.07 -313.79 -0.96 -14.29 15 5 N -0.31 -16.99 9.98 -51.61 -0.51 -17.51 15 6 C 0.15 8.53 6.75 40.78 0.28 8.80 15 7 C -0.49 -27.43 9.41 23.44 0.22 -27.21 15 8 H 0.08 4.52 7.85 -2.91 -0.02 4.50 15 9 C 0.03 1.53 5.49 85.22 0.47 2.00 15 10 N -0.82 -46.15 12.04 21.81 0.26 -45.88 15 11 Si 0.98 40.67 29.56 68.60 2.03 42.69 15 12 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 13 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 15 C -0.25 -12.17 10.58 22.53 0.24 -11.94 15 16 C -0.12 -5.14 6.38 41.20 0.26 -4.87 15 17 C 0.56 19.68 3.38 71.24 0.24 19.92 15 18 F -0.17 -5.83 17.30 44.97 0.78 -5.05 15 19 F -0.17 -5.68 17.03 44.97 0.77 -4.92 15 20 F -0.17 -5.41 14.51 44.97 0.65 -4.76 15 21 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.11 2.48 8.14 -2.39 -0.02 2.46 15 24 H 0.12 3.56 5.32 -2.39 -0.01 3.55 15 25 H 0.05 1.61 8.14 -2.39 -0.02 1.60 15 26 H 0.11 2.43 8.14 -2.39 -0.02 2.41 15 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 28 H 0.27 14.18 8.30 -92.71 -0.77 13.41 15 29 H 0.15 6.53 8.06 -2.91 -0.02 6.51 15 Total: -1.00 -64.13 267.25 7.39 -56.73 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.18 Total: 9.76 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.20 Total: -16.77 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -1.21 Total: -77.68 kcal Atomic # 9 Polarization: -16.93 SS G_CDS: 2.20 Total: -14.73 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -64.13 7.39 -56.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261352421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.536 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds