Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47284 * 2 1 4 4 N 1.40085 * 126.03390 * 269.97073 * 3 2 1 5 5 C 1.30843 * 108.20478 * 179.74018 * 4 3 2 6 6 C 1.39875 * 108.19721 * 0.44290 * 5 4 3 7 7 C 1.50703 * 126.03606 * 179.81659 * 6 5 4 8 8 C 1.50701 * 109.47064 * 264.69041 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47094 * 90.00289 * 12 10 8 14 14 H 1.48505 * 109.47195 * 210.00171 * 12 10 8 15 15 H 1.48493 * 109.47449 * 330.00136 * 12 10 8 16 16 C 1.34941 * 126.03843 * 90.00269 * 3 2 1 17 17 C 1.50704 * 126.12999 * 359.95637 * 16 3 2 18 18 F 1.39897 * 109.46753 * 30.02494 * 17 16 3 19 19 F 1.39894 * 109.47579 * 150.02688 * 17 16 3 20 20 F 1.39899 * 109.46772 * 270.02883 * 17 16 3 21 21 H 1.09007 * 109.46795 * 300.00287 * 1 2 3 22 22 H 1.09003 * 109.47058 * 59.99794 * 1 2 3 23 23 H 1.08996 * 109.47606 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47280 * 239.99768 * 2 1 3 25 25 H 1.09008 * 109.47386 * 119.99861 * 2 1 3 26 26 H 1.07995 * 125.90089 * 180.25838 * 5 4 3 27 27 H 1.09002 * 109.47152 * 144.69134 * 7 6 5 28 28 H 1.09001 * 109.46980 * 24.69234 * 7 6 5 29 29 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2936 2.1580 -1.1328 5 6 2.7033 3.3342 -0.7322 6 6 2.7118 3.3408 0.6665 7 6 3.1201 4.4951 1.5452 8 6 4.5664 4.3395 1.9390 9 1 5.1333 3.4900 1.5878 10 6 5.1662 5.2822 2.7469 11 7 4.4759 6.3169 3.1741 12 14 6.9591 5.0897 3.2344 13 1 7.8203 5.7643 2.2302 14 1 7.1783 5.7052 4.5680 15 1 7.3040 3.6466 3.2927 16 6 2.2830 2.1297 1.0912 17 6 2.1284 1.6949 2.5258 18 9 2.3397 0.3152 2.6202 19 9 3.0647 2.3655 3.3199 20 9 0.8370 2.0002 2.9689 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.9887 4.1568 -1.3711 27 1 2.4990 4.5074 2.4408 28 1 2.9904 5.4301 1.0002 29 1 4.8978 6.9799 3.7428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360301.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = -95.971238 kcal Electronic energy + Delta-G solvation = -18887.066724 eV Core-core repulsion = 15396.390822 eV Total energy + Delta-G solvation = -3490.675902 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.26076 -48.83389 -48.64550 -42.37022 -36.02068 -34.98832 -32.92046 -31.47912 -28.96395 -26.89130 -25.08515 -24.29969 -21.95335 -21.51785 -19.65297 -19.29176 -18.70943 -18.36121 -16.94081 -16.51716 -16.13654 -15.90259 -15.45584 -15.36762 -15.15611 -14.91808 -14.80336 -14.62297 -14.35524 -14.11425 -13.78949 -13.49289 -13.00034 -12.91798 -12.75113 -12.49172 -12.26238 -11.93209 -11.53623 -11.48997 -10.62200 -10.51174 -9.42885 -8.11734 -6.21353 0.38587 1.09946 1.43280 1.44233 1.54250 1.67603 1.69412 2.47369 2.57831 3.04238 3.20624 3.29315 3.49583 4.01894 4.06131 4.29515 4.41443 4.43823 4.70620 4.81143 4.87351 5.13689 5.37512 5.55447 5.58552 5.79696 5.82201 6.24452 6.47989 6.87030 7.45288 8.97948 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.008292 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.196069 B = 3375.835480 C = 3744.135176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.348 5.348 4 N -0.272 5.272 5 C 0.041 3.959 6 C -0.141 4.141 7 C 0.087 3.913 8 C -0.508 4.508 9 H 0.049 0.951 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.953 3.047 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.270 1.270 16 C -0.047 4.047 17 C 0.544 3.456 18 F -0.170 7.170 19 F -0.155 7.155 20 F -0.174 7.174 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.111 0.889 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.211 0.789 27 H 0.004 0.996 28 H 0.019 0.981 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 -12.511 -4.540 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.134 5.134 4 N -0.094 5.094 5 C -0.143 4.143 6 C -0.153 4.153 7 C 0.049 3.951 8 C -0.547 4.547 9 H 0.067 0.933 10 C -0.187 4.187 11 N -0.568 5.568 12 Si 0.779 3.221 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.195 1.195 16 C -0.173 4.173 17 C 0.488 3.512 18 F -0.152 7.152 19 F -0.136 7.136 20 F -0.155 7.155 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.130 0.870 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.228 0.772 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.778 -13.284 -5.406 15.863 hybrid contribution 1.015 0.780 1.381 1.883 sum -5.763 -12.504 -4.025 14.344 Atomic orbital electron populations 1.22169 0.92693 1.04885 1.02308 1.22438 0.96741 0.75921 1.06775 1.48733 1.50716 1.12828 1.01160 1.77210 1.20531 1.04086 1.07611 1.24126 0.99926 0.96409 0.93812 1.20661 1.03224 0.95815 0.95606 1.17576 0.95399 0.89960 0.92151 1.21177 0.95942 1.07681 1.29858 0.93304 1.25725 1.02049 0.94950 0.95997 1.70055 1.38109 1.12706 1.35950 0.85620 0.80409 0.78390 0.77711 1.19660 1.20820 1.19484 1.20459 1.12832 0.95719 0.88304 1.17196 0.74321 0.74437 0.85254 1.93086 1.94725 1.30805 1.96562 1.93379 1.65027 1.79911 1.75280 1.93204 1.38664 1.92908 1.90725 0.93426 0.92111 0.87012 0.86351 0.87193 0.77247 0.97742 0.96305 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.24 71.98 0.74 -2.38 15 2 C 0.10 2.31 6.88 86.38 0.59 2.91 15 3 N -0.35 -11.61 3.61 -334.69 -1.21 -12.81 15 4 N -0.27 -9.57 12.58 -57.02 -0.72 -10.29 15 5 C 0.04 1.54 11.96 85.24 1.02 2.56 15 6 C -0.14 -6.14 5.25 -20.14 -0.11 -6.24 15 7 C 0.09 4.51 4.60 29.10 0.13 4.65 15 8 C -0.51 -28.20 7.91 25.60 0.20 -27.99 15 9 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 10 C 0.01 0.62 5.46 84.66 0.46 1.08 15 11 N -0.93 -54.94 13.29 21.45 0.28 -54.65 15 12 Si 0.95 44.13 29.54 68.60 2.03 46.16 15 13 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 16 C -0.05 -1.83 6.39 41.41 0.26 -1.56 15 17 C 0.54 20.42 3.32 71.24 0.24 20.65 15 18 F -0.17 -5.34 14.55 44.97 0.65 -4.68 15 19 F -0.15 -6.95 14.37 44.97 0.65 -6.30 15 20 F -0.17 -6.23 17.30 44.97 0.78 -5.45 15 21 H 0.05 1.06 8.14 -2.38 -0.02 1.04 15 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.11 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.11 2.38 5.56 -2.38 -0.01 2.37 15 26 H 0.21 6.60 8.06 -2.91 -0.02 6.57 15 27 H 0.00 0.24 7.40 -2.39 -0.02 0.23 15 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 Total: -1.00 -63.95 266.34 7.18 -56.76 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: 1.18 Total: -2.39 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 3.54 Total: -6.34 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.64 Total: -77.75 kcal Atomic # 9 Polarization: -18.51 SS G_CDS: 2.08 Total: -16.44 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.95 7.18 -56.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360301.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.210 kcal (2) G-P(sol) polarization free energy of solvation -63.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds