Wall clock time and date at job start Mon Mar 30 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86790 * 120.00388 * 2 1 4 4 H 1.48504 * 109.47542 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47195 * 300.00047 * 3 2 1 6 6 H 1.48510 * 109.46888 * 59.99782 * 3 2 1 7 7 C 1.37878 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46970 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46696 * 179.97438 * 10 9 7 12 12 C 1.39035 * 120.00151 * 180.02562 * 11 10 9 13 13 N 1.32031 * 119.76257 * 0.02608 * 12 11 10 14 14 C 1.32437 * 121.93768 * 179.97438 * 13 12 11 15 15 C 1.35935 * 121.54691 * 359.97438 * 14 13 12 16 16 C 1.41707 * 119.44969 * 0.02562 * 15 14 13 17 17 C 1.44896 * 130.36436 * 180.02562 * 16 15 14 18 18 C 1.32142 * 114.81524 * 179.97438 * 17 16 15 19 19 S 1.75358 * 111.33234 * 0.02562 * 18 17 16 20 20 C 1.39719 * 117.62514 * 359.97438 * 16 15 14 21 21 H 0.97002 * 119.99867 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47449 * 59.99900 * 9 7 2 23 23 H 1.08995 * 109.47129 * 299.99847 * 9 7 2 24 24 H 1.08995 * 109.46667 * 60.00557 * 10 9 7 25 25 H 1.08995 * 109.47705 * 300.00272 * 10 9 7 26 26 H 0.97001 * 120.00233 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.23046 * 180.02562 * 14 13 12 28 28 H 1.07992 * 120.27172 * 179.97438 * 15 14 13 29 29 H 1.07992 * 122.58930 * 359.72521 * 17 16 15 30 30 H 1.08003 * 124.32911 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.2076 -6.1350 0.0018 13 7 3.5279 -6.1296 0.0024 14 6 4.2331 -7.2507 0.0035 15 6 3.6311 -8.4695 0.0047 16 6 2.2162 -8.5477 0.0041 17 6 1.3402 -9.7019 0.0055 18 6 0.0495 -9.4185 0.0050 19 16 -0.2233 -7.6863 0.0019 20 6 1.5010 -7.3475 0.0029 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6239 -2.5567 0.8903 24 1 2.8717 -3.6044 0.8906 25 1 2.8719 -3.6045 -0.8893 26 1 0.5426 -4.9308 0.0011 27 1 5.3117 -7.1953 0.0044 28 1 4.2263 -9.3706 0.0052 29 1 1.7133 -10.7153 0.0030 30 1 -0.7367 -10.1591 0.0055 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308864255.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:58 Heat of formation + Delta-G solvation = 29.259185 kcal Electronic energy + Delta-G solvation = -14717.557557 eV Core-core repulsion = 12216.921665 eV Total energy + Delta-G solvation = -2500.635892 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26412 -37.84022 -36.48185 -35.07016 -32.45620 -31.28820 -29.85990 -26.58312 -25.29912 -23.75158 -23.00052 -21.35568 -19.41667 -18.58800 -17.81759 -17.36462 -16.53315 -16.19151 -15.78853 -15.53745 -15.41417 -15.06959 -14.77285 -14.24093 -13.39855 -13.30496 -13.24005 -12.91862 -12.86469 -12.47398 -12.39873 -11.73425 -11.58525 -11.40480 -11.31939 -10.61010 -10.48789 -10.07233 -9.67578 -8.28924 -8.25521 -6.36761 -0.26553 0.29728 0.52571 1.03650 1.40811 1.40911 1.43789 1.55018 2.19749 2.43545 2.91091 3.09167 3.60191 3.73128 3.94453 4.11421 4.41499 4.49683 4.52089 4.70308 4.77656 4.86236 4.90639 5.11525 5.33344 5.40429 5.54749 5.61663 5.74960 6.03874 6.20790 6.35549 6.77184 7.28573 7.33158 8.87182 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.038792 B = 0.004656 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.622471 B = 6012.772207 C = 6713.948794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.020 3.980 10 C 0.161 3.839 11 N -0.719 5.719 12 C 0.435 3.565 13 N -0.572 5.572 14 C 0.124 3.876 15 C -0.199 4.199 16 C -0.011 4.011 17 C -0.132 4.132 18 C -0.163 4.163 19 S 0.076 5.924 20 C -0.282 4.282 21 H 0.266 0.734 22 H 0.001 0.999 23 H 0.001 0.999 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.405 0.595 27 H 0.183 0.817 28 H 0.170 0.830 29 H 0.185 0.815 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 -21.465 0.006 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.017 4.017 10 C 0.038 3.962 11 N -0.350 5.350 12 C 0.190 3.810 13 N -0.294 5.294 14 C -0.027 4.027 15 C -0.224 4.224 16 C -0.027 4.027 17 C -0.162 4.162 18 C -0.298 4.298 19 S 0.337 5.663 20 C -0.403 4.403 21 H 0.074 0.926 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.241 0.759 27 H 0.200 0.800 28 H 0.188 0.812 29 H 0.202 0.798 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.899 -19.531 0.003 19.623 hybrid contribution 0.496 -0.336 0.002 0.599 sum 2.394 -19.868 0.005 20.011 Atomic orbital electron populations 1.70090 1.07764 1.27976 1.51121 1.25944 0.95800 1.03353 0.94313 0.85325 0.79028 0.78377 0.77881 1.18623 1.20198 1.20208 1.21469 0.93656 0.91592 1.51410 0.91926 1.19158 0.94414 0.92470 0.95705 1.21101 0.94358 0.81013 0.99763 1.44969 1.08294 1.03063 1.78693 1.18019 0.88624 0.84272 0.90115 1.67337 1.04909 1.33536 1.23595 1.22398 1.00924 0.86514 0.92833 1.21645 0.91993 1.00221 1.08531 1.19824 0.95147 0.91171 0.96576 1.21190 0.91411 0.99256 1.04346 1.25708 1.01238 0.97871 1.04955 1.84207 1.00729 1.03007 1.78353 1.23205 0.99590 0.97046 1.20432 0.92554 0.98053 0.98045 0.93501 0.93489 0.75907 0.79968 0.81245 0.79813 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.07 5.09 29.85 0.15 1.23 16 10 C 0.16 7.38 5.63 86.38 0.49 7.87 16 11 N -0.72 -28.90 5.71 -344.26 -1.96 -30.86 16 12 C 0.44 16.12 7.52 133.46 1.00 17.13 16 13 N -0.57 -20.69 9.55 -193.80 -1.85 -22.54 16 14 C 0.12 3.34 11.06 84.07 0.93 4.27 16 15 C -0.20 -4.47 10.13 22.59 0.23 -4.24 16 16 C -0.01 -0.28 6.09 -20.36 -0.12 -0.40 16 17 C -0.13 -2.34 10.39 22.98 0.24 -2.10 16 18 C -0.16 -2.80 11.04 66.83 0.74 -2.06 16 19 S 0.08 1.92 22.74 -56.49 -1.28 0.64 16 20 C -0.28 -8.77 6.43 23.14 0.15 -8.62 16 21 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 22 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 23 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 24 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.41 15.55 8.02 -92.71 -0.74 14.81 16 27 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 29 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -69.14 278.97 2.12 -67.02 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.41 Total: 12.53 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.50 Total: -17.27 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.53 Total: -109.37 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.28 Total: 0.64 kcal Total: -69.14 2.12 -67.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308864255.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.282 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds