Wall clock time and date at job start Mon Mar 30 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47004 * 270.00220 * 3 2 1 5 5 H 1.48496 * 109.46991 * 30.00247 * 3 2 1 6 6 H 1.48507 * 109.46994 * 150.00250 * 3 2 1 7 7 C 1.37881 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00133 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00179 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47423 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47423 * 179.97438 * 10 9 7 12 12 C 1.38793 * 120.00327 * 179.97438 * 11 10 9 13 13 N 1.31789 * 119.76736 * 0.02562 * 12 11 10 14 14 C 1.32412 * 122.25931 * 179.97438 * 13 12 11 15 15 C 1.36315 * 121.23630 * 0.02562 * 14 13 12 16 16 C 1.40258 * 119.42744 * 0.02562 * 15 14 13 17 17 S 1.75654 * 131.51533 * 180.02562 * 16 15 14 18 18 C 1.75361 * 92.15792 * 179.97438 * 17 16 15 19 19 C 1.31905 * 111.38584 * 0.02562 * 18 17 16 20 20 C 1.39802 * 118.73386 * 359.97438 * 16 15 14 21 21 H 0.97006 * 119.99607 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.46884 * 59.99639 * 9 7 2 23 23 H 1.08999 * 109.46823 * 300.00082 * 9 7 2 24 24 H 1.09005 * 109.46505 * 59.99812 * 10 9 7 25 25 H 1.09002 * 109.47091 * 300.00413 * 10 9 7 26 26 H 0.97001 * 119.99943 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.38315 * 180.27555 * 14 13 12 28 28 H 1.08001 * 120.28488 * 179.97438 * 15 14 13 29 29 H 1.07996 * 124.30686 * 180.02562 * 18 17 16 30 30 H 1.07998 * 122.56299 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 7 5.4864 -2.6367 -0.0022 12 6 6.1804 -3.8387 -0.0018 13 7 5.5168 -4.9773 -0.0008 14 6 6.1284 -6.1518 -0.0009 15 6 7.4887 -6.2404 -0.0014 16 6 8.2557 -5.0662 -0.0014 17 16 9.9936 -4.8108 -0.0025 18 6 9.8042 -3.0674 -0.0023 19 6 8.5312 -2.7220 -0.0008 20 6 7.5970 -3.8331 -0.0013 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8744 -0.6801 -0.8911 24 1 3.6577 -3.1506 -0.8908 25 1 3.6584 -3.1503 0.8892 26 1 5.9714 -1.7967 -0.0025 27 1 5.5385 -7.0564 -0.0046 28 1 7.9715 -7.2065 -0.0010 29 1 10.6253 -2.3659 -0.0032 30 1 8.2086 -1.6913 -0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308885143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:01 Heat of formation + Delta-G solvation = 50.720074 kcal Electronic energy + Delta-G solvation = -14788.777283 eV Core-core repulsion = 12289.072005 eV Total energy + Delta-G solvation = -2499.705278 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.25857 -36.13881 -35.72674 -33.10747 -31.28326 -30.35650 -28.37839 -25.14843 -23.97748 -22.41415 -21.03645 -20.52140 -18.47457 -17.11153 -16.35721 -16.24671 -15.05319 -14.83341 -14.65837 -14.21505 -14.19174 -13.72355 -13.53155 -12.63057 -12.54806 -12.20210 -11.82032 -11.51014 -11.36267 -11.07873 -10.69905 -10.12765 -10.05196 -9.91640 -9.40025 -9.23851 -9.18440 -8.62946 -8.38765 -7.23955 -6.12237 -4.12158 0.73910 1.40684 1.41963 1.86573 2.24925 3.24241 3.32089 3.33094 3.50815 3.99701 4.36739 4.51066 4.77328 4.87723 5.17980 5.20865 5.23824 5.58504 5.67328 5.78280 6.03421 6.11440 6.20969 6.22744 6.48652 6.56964 7.03584 7.22643 7.38588 7.63220 7.68616 8.39315 8.48922 8.92217 9.48105 11.00793 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.004772 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.729265 B = 5866.734696 C = 6591.017272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.024 4.024 10 C 0.140 3.860 11 N -0.706 5.706 12 C 0.463 3.537 13 N -0.550 5.550 14 C 0.167 3.833 15 C -0.221 4.221 16 C -0.060 4.060 17 S 0.086 5.914 18 C -0.218 4.218 19 C -0.086 4.086 20 C -0.199 4.199 21 H 0.265 0.735 22 H 0.021 0.979 23 H 0.016 0.984 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.404 0.596 27 H 0.158 0.842 28 H 0.130 0.870 29 H 0.166 0.834 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.001 -8.430 0.011 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.017 3.983 11 N -0.333 5.333 12 C 0.217 3.783 13 N -0.270 5.270 14 C 0.013 3.987 15 C -0.250 4.250 16 C -0.183 4.183 17 S 0.347 5.653 18 C -0.352 4.352 19 C -0.117 4.117 20 C -0.213 4.213 21 H 0.075 0.925 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.240 0.760 27 H 0.176 0.824 28 H 0.148 0.852 29 H 0.184 0.816 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 19.974 -9.163 0.012 21.975 hybrid contribution 0.274 2.184 -0.016 2.201 sum 20.247 -6.979 -0.004 21.417 Atomic orbital electron populations 1.69900 1.06271 1.27044 1.50433 1.24989 0.94749 0.99100 0.94376 0.86768 0.80269 0.83632 0.78507 1.20221 1.21234 1.19159 1.20893 0.88537 0.94900 1.51622 0.90546 1.19816 0.98077 0.91560 0.96734 1.21518 0.75270 0.99790 1.01704 1.45182 1.08296 1.03791 1.76069 1.18393 0.85194 0.87491 0.87269 1.67155 1.39558 0.97034 1.23283 1.21974 0.91235 0.94655 0.90873 1.20739 0.94519 0.96377 1.13372 1.22716 0.97377 0.96655 1.01528 1.83945 1.01061 1.01699 1.78626 1.24857 1.00318 0.98233 1.11774 1.20740 0.91496 0.98847 1.00591 1.19514 0.93416 0.92910 1.15456 0.92543 0.96114 0.96543 0.91875 0.91846 0.75990 0.82435 0.85181 0.81645 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.55 4.16 -27.88 -0.12 -0.67 16 10 C 0.14 2.81 5.63 -4.05 -0.02 2.79 16 11 N -0.71 -12.00 5.70 -59.91 -0.34 -12.34 16 12 C 0.46 7.73 7.55 -154.77 -1.17 6.56 16 13 N -0.55 -9.32 9.51 -12.29 -0.12 -9.44 16 14 C 0.17 2.26 11.10 -17.99 -0.20 2.06 16 15 C -0.22 -2.75 10.08 -39.52 -0.40 -3.15 16 16 C -0.06 -0.82 6.55 -38.24 -0.25 -1.07 16 17 S 0.09 0.93 23.23 -107.50 -2.50 -1.57 16 18 C -0.22 -2.28 11.03 28.83 0.32 -1.96 16 19 C -0.09 -1.04 9.99 -38.74 -0.39 -1.43 16 20 C -0.20 -2.91 6.07 -105.26 -0.64 -3.55 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.47 7.20 -51.92 -0.37 0.10 16 23 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.40 6.02 7.69 -40.82 -0.31 5.71 16 27 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.45 7.61 -52.49 -0.40 1.05 16 LS Contribution 274.72 15.07 4.14 4.14 Total: -1.00 -31.17 274.72 -9.19 -40.35 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.18 Total: 2.31 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.29 Total: -13.39 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.32 Total: -48.28 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.17 -9.19 -40.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308885143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.074 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds