Wall clock time and date at job start Mon Mar 30 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.39921 * 119.99811 * 275.00126 * 12 2 1 14 14 C 1.39390 * 119.77091 * 359.97438 * 13 12 2 15 15 C 1.37540 * 120.01230 * 179.97438 * 14 13 12 16 16 C 1.39349 * 120.21333 * 0.05230 * 15 14 13 17 17 S 1.76127 * 131.56257 * 179.97438 * 16 15 14 18 18 C 1.70637 * 90.83534 * 179.97438 * 17 16 15 19 19 N 1.27954 * 111.51877 * 359.97438 * 18 17 16 20 20 C 1.34679 * 117.83442 * 0.02562 * 19 18 17 21 21 C 1.37787 * 119.76680 * 179.72540 * 13 12 2 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 27 27 H 1.07998 * 119.99427 * 0.02562 * 14 13 12 28 28 H 1.08003 * 119.89723 * 180.02562 * 15 14 13 29 29 H 1.07993 * 124.24143 * 179.97438 * 18 17 16 30 30 H 1.08000 * 119.86918 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1520 0.0074 2.4015 14 6 1.8195 1.3599 2.4585 15 6 1.9485 2.0508 3.6408 16 6 2.4121 1.4033 4.7843 17 16 2.6890 1.9831 6.4242 18 6 3.2130 0.4336 6.9103 19 7 3.1748 -0.4003 5.9406 20 6 2.7493 0.0464 4.7434 21 6 2.6064 -0.6482 3.5250 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 2.2491 -1.6318 1.1527 27 1 1.4599 1.8652 1.5744 28 1 1.6900 3.0986 3.6830 29 1 3.5364 0.1877 7.9109 30 1 2.8570 -1.6973 3.4710 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308988297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:52 Heat of formation + Delta-G solvation = 54.835162 kcal Electronic energy + Delta-G solvation = -15055.159961 eV Core-core repulsion = 12555.633127 eV Total energy + Delta-G solvation = -2499.526834 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96422 -37.50202 -34.94106 -32.70299 -30.53795 -29.24919 -27.37666 -25.31834 -24.60306 -22.50183 -21.47497 -19.80672 -18.09878 -17.26516 -16.22814 -15.51773 -15.28631 -14.79058 -14.43742 -14.03032 -13.42539 -13.27956 -12.74140 -12.61947 -12.50658 -11.64749 -11.51642 -11.09240 -11.03540 -10.77200 -10.67174 -10.36396 -10.25362 -9.95982 -9.44366 -9.17957 -8.93245 -8.55377 -8.01047 -6.66482 -6.22972 -4.31371 0.74076 1.58333 1.77090 2.01562 2.75358 3.21001 3.26151 3.28108 4.03474 4.18539 4.27811 4.55963 4.99769 5.10151 5.40605 5.56760 5.68591 5.76256 6.23127 6.44999 6.53040 6.63597 6.71862 6.83656 6.88883 6.98326 7.32284 7.58671 7.74357 7.85037 7.97367 8.22029 8.56562 8.79998 9.36159 10.82960 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.054958 B = 0.004677 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.356821 B = 5985.052673 C = 6247.765747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.265 3.735 3 H 0.042 0.958 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.718 5.718 13 C 0.251 3.749 14 C -0.158 4.158 15 C -0.034 4.034 16 C -0.237 4.237 17 S 0.054 5.946 18 C 0.063 3.937 19 N -0.471 5.471 20 C 0.123 3.877 21 C -0.182 4.182 22 H 0.091 0.909 23 H 0.014 0.986 24 H 0.030 0.970 25 H 0.266 0.734 26 H 0.393 0.607 27 H 0.141 0.859 28 H 0.125 0.875 29 H 0.196 0.804 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 2.230 13.364 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.340 5.340 13 C 0.138 3.862 14 C -0.182 4.182 15 C -0.057 4.057 16 C -0.357 4.357 17 S 0.304 5.696 18 C -0.242 4.242 19 N -0.185 5.185 20 C 0.005 3.995 21 C -0.211 4.211 22 H 0.110 0.890 23 H 0.033 0.967 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.227 0.773 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.212 0.788 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.621 2.808 13.625 14.006 hybrid contribution 0.340 -1.344 -1.515 2.054 sum 1.961 1.464 12.110 12.355 Atomic orbital electron populations 1.22209 0.98603 0.99768 1.00682 1.18797 0.90801 0.93480 0.80603 0.94066 1.21147 1.32400 1.13369 0.90171 0.92071 1.24862 0.94690 0.94948 0.99075 1.69856 1.35894 1.22480 1.24164 0.86485 0.79237 0.79653 0.81643 1.20124 1.21067 1.20124 1.45733 1.68726 1.12286 1.07219 1.17683 0.90580 0.91285 0.86623 1.20959 1.05553 0.93370 0.98343 1.20022 0.96925 0.98930 0.89802 1.23271 1.16300 0.98054 0.98055 1.83600 1.67259 1.15110 1.03624 1.27897 1.01638 0.92491 1.02196 1.66190 1.16806 1.36130 0.99330 1.18728 0.99289 0.89978 0.91551 1.19694 1.12167 0.99916 0.89323 0.89046 0.96739 0.95079 0.92437 0.77318 0.84084 0.85723 0.78777 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.20 37.16 0.34 -3.16 16 2 C 0.27 6.17 2.25 -69.08 -0.16 6.02 16 3 H 0.04 1.03 6.47 -51.93 -0.34 0.70 16 4 C -0.53 -13.59 8.73 -34.44 -0.30 -13.89 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -23.62 11.32 55.43 0.63 -22.99 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.72 -14.46 5.25 -53.38 -0.28 -14.74 16 13 C 0.25 4.73 6.61 -83.90 -0.55 4.17 16 14 C -0.16 -2.83 8.82 -39.41 -0.35 -3.17 16 15 C -0.03 -0.54 10.05 -39.42 -0.40 -0.93 16 16 C -0.24 -3.86 6.55 -38.55 -0.25 -4.11 16 17 S 0.05 0.68 23.17 -107.50 -2.49 -1.81 16 18 C 0.06 0.79 12.10 51.15 0.62 1.41 16 19 N -0.47 -7.68 10.57 -12.95 -0.14 -7.82 16 20 C 0.12 2.17 6.99 -84.96 -0.59 1.58 16 21 C -0.18 -3.27 9.93 -38.71 -0.38 -3.66 16 22 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 23 H 0.01 0.29 7.69 -51.93 -0.40 -0.11 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.39 7.44 8.54 -40.82 -0.35 7.09 16 27 H 0.14 2.59 6.08 -52.49 -0.32 2.27 16 28 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 270.91 15.07 4.08 4.08 Total: -1.00 -27.53 270.91 -8.29 -35.82 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -2.95 Total: 6.40 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.12 Total: -14.11 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.21 Total: -45.54 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.49 Total: -1.81 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.53 -8.29 -35.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308988297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.655 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds