Wall clock time and date at job start Mon Mar 30 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.39921 * 119.99811 * 275.00126 * 12 2 1 14 14 C 1.39390 * 119.77091 * 359.97438 * 13 12 2 15 15 C 1.37540 * 120.01230 * 179.97438 * 14 13 12 16 16 C 1.39349 * 120.21333 * 0.05230 * 15 14 13 17 17 S 1.76127 * 131.56257 * 179.97438 * 16 15 14 18 18 C 1.70637 * 90.83534 * 179.97438 * 17 16 15 19 19 N 1.27954 * 111.51877 * 359.97438 * 18 17 16 20 20 C 1.34679 * 117.83442 * 0.02562 * 19 18 17 21 21 C 1.37787 * 119.76680 * 179.72540 * 13 12 2 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 27 27 H 1.07998 * 119.99427 * 0.02562 * 14 13 12 28 28 H 1.08003 * 119.89723 * 180.02562 * 15 14 13 29 29 H 1.07993 * 124.24143 * 179.97438 * 18 17 16 30 30 H 1.08000 * 119.86918 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1520 0.0074 2.4015 14 6 1.8195 1.3599 2.4585 15 6 1.9485 2.0508 3.6408 16 6 2.4121 1.4033 4.7843 17 16 2.6890 1.9831 6.4242 18 6 3.2130 0.4336 6.9103 19 7 3.1748 -0.4003 5.9406 20 6 2.7493 0.0464 4.7434 21 6 2.6064 -0.6482 3.5250 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 2.2491 -1.6318 1.1527 27 1 1.4599 1.8652 1.5744 28 1 1.6900 3.0986 3.6830 29 1 3.5364 0.1877 7.9109 30 1 2.8570 -1.6973 3.4710 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308988297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:51 Heat of formation + Delta-G solvation = 38.350194 kcal Electronic energy + Delta-G solvation = -15055.874803 eV Core-core repulsion = 12555.633127 eV Total energy + Delta-G solvation = -2500.241676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22512 -38.90723 -36.51701 -34.43438 -32.07021 -30.67374 -28.89191 -27.26392 -25.78871 -23.81549 -23.07492 -21.29082 -19.32114 -18.93480 -17.63688 -17.14115 -16.74472 -16.34558 -15.67842 -15.49001 -14.70095 -14.68076 -14.39945 -14.13405 -13.91661 -13.37833 -13.02829 -12.83850 -12.72959 -12.46434 -12.22345 -12.03306 -11.87892 -11.35172 -11.05069 -10.57702 -10.54529 -10.14912 -9.26195 -8.21548 -8.07385 -6.33668 -0.44259 0.44429 0.48903 0.88313 1.44044 1.44194 1.52048 1.53717 2.36090 2.72639 2.84472 3.11711 3.33683 3.77234 4.20174 4.36016 4.38613 4.51311 4.71089 4.92740 4.98979 5.07138 5.16156 5.24602 5.38203 5.41457 5.56446 5.69978 5.88147 6.09426 6.49583 6.71315 6.78716 7.10943 7.38078 8.86088 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.054958 B = 0.004677 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.356821 B = 5985.052673 C = 6247.765747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.275 3.725 3 H 0.018 0.982 4 C -0.550 4.550 5 H 0.060 0.940 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.725 5.725 13 C 0.237 3.763 14 C -0.179 4.179 15 C -0.023 4.023 16 C -0.263 4.263 17 S 0.122 5.878 18 C 0.077 3.923 19 N -0.510 5.510 20 C 0.111 3.889 21 C -0.192 4.192 22 H 0.069 0.931 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.266 0.734 26 H 0.396 0.604 27 H 0.129 0.871 28 H 0.153 0.847 29 H 0.242 0.758 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 2.631 15.441 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.172 3.828 3 H 0.036 0.964 4 C -0.588 4.588 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.199 1.199 12 N -0.349 5.349 13 C 0.126 3.874 14 C -0.204 4.204 15 C -0.046 4.046 16 C -0.382 4.382 17 S 0.373 5.627 18 C -0.226 4.226 19 N -0.224 5.224 20 C -0.008 4.008 21 C -0.221 4.221 22 H 0.088 0.912 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.230 0.770 27 H 0.147 0.853 28 H 0.170 0.830 29 H 0.258 0.742 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.220 3.225 15.749 16.229 hybrid contribution 0.201 -1.372 -1.882 2.338 sum 2.420 1.853 13.867 14.198 Atomic orbital electron populations 1.22024 0.98470 0.99289 1.00145 1.18446 0.90803 0.92303 0.81295 0.96391 1.21488 1.32457 1.13511 0.91360 0.92186 1.25606 0.94885 0.95609 1.01707 1.69971 1.36721 1.23537 1.24669 0.85537 0.78603 0.78686 0.78358 1.19617 1.20744 1.19923 1.45405 1.70118 1.12340 1.07008 1.17792 0.91555 0.91730 0.86298 1.20945 1.07120 0.93310 0.98990 1.20275 0.95338 1.00000 0.88992 1.23697 1.15840 0.98182 1.00489 1.83415 1.65666 1.13857 0.99764 1.28790 0.98538 0.92191 1.03125 1.66257 1.19210 1.37484 0.99486 1.18942 0.99186 0.90676 0.92040 1.19743 1.12507 1.00192 0.89649 0.91246 0.95441 0.95364 0.92446 0.76974 0.85342 0.82972 0.74214 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 9.20 71.98 0.66 -5.91 16 2 C 0.28 13.24 2.25 44.25 0.10 13.34 16 3 H 0.02 0.96 6.47 -2.39 -0.02 0.94 16 4 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 5 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 6 C 0.02 1.18 5.30 84.65 0.45 1.63 16 7 N -0.91 -49.50 11.32 21.45 0.24 -49.26 16 8 Si 0.96 41.64 29.54 68.60 2.03 43.67 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 N -0.72 -30.20 5.25 -322.81 -1.69 -31.89 16 13 C 0.24 9.14 6.61 38.02 0.25 9.39 16 14 C -0.18 -6.53 8.82 22.38 0.20 -6.34 16 15 C -0.02 -0.72 10.05 22.37 0.22 -0.50 16 16 C -0.26 -8.03 6.55 22.94 0.15 -7.88 16 17 S 0.12 2.59 23.17 -56.49 -1.31 1.28 16 18 C 0.08 1.64 12.10 130.81 1.58 3.22 16 19 N -0.51 -15.50 10.57 -194.77 -2.06 -17.56 16 20 C 0.11 3.78 6.99 39.78 0.28 4.06 16 21 C -0.19 -6.99 9.93 22.83 0.23 -6.77 16 22 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 23 H 0.03 1.16 7.69 -2.39 -0.02 1.14 16 24 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 26 H 0.40 15.55 8.54 -92.71 -0.79 14.76 16 27 H 0.13 4.94 6.08 -2.91 -0.02 4.92 16 28 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.24 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -59.63 270.91 1.93 -57.70 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.38 Total: 20.28 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 4.35 Total: -24.22 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -3.51 Total: -98.71 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.31 Total: 1.28 kcal Total: -59.63 1.93 -57.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308988297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.046 kcal (2) G-P(sol) polarization free energy of solvation -59.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds