Wall clock time and date at job start Mon Mar 30 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86794 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47230 * 270.60535 * 3 2 1 5 5 H 1.48509 * 109.46889 * 30.60242 * 3 2 1 6 6 H 1.48499 * 109.46996 * 150.60044 * 3 2 1 7 7 C 1.39970 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00512 * 343.14217 * 7 2 1 9 9 C 1.41160 * 119.99613 * 163.13494 * 7 2 1 10 10 C 1.41543 * 119.87793 * 329.37689 * 9 7 2 11 11 C 1.35298 * 120.75475 * 179.97438 * 10 9 7 12 12 C 1.41098 * 120.21310 * 0.02562 * 11 10 9 13 13 C 1.40204 * 120.90570 * 179.97438 * 12 11 10 14 14 C 1.36387 * 119.78955 * 180.02562 * 13 12 11 15 15 C 1.39289 * 121.03183 * 0.04457 * 14 13 12 16 16 C 1.36155 * 120.91559 * 359.95301 * 15 14 13 17 17 C 1.40840 * 119.63761 * 0.02562 * 16 15 14 18 18 C 1.39959 * 121.03034 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.32525 * 0.04448 * 18 17 16 20 20 F 1.39900 * 109.46965 * 298.03004 * 19 18 17 21 21 F 1.39902 * 109.47321 * 58.02953 * 19 18 17 22 22 H 0.97001 * 119.99677 * 0.02562 * 1 2 3 23 23 H 1.07996 * 119.62027 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.88992 * 180.28189 * 11 10 9 25 25 H 1.08002 * 120.10420 * 0.02562 * 13 12 11 26 26 H 1.07997 * 119.48372 * 179.97438 * 14 13 12 27 27 H 1.08003 * 119.54213 * 179.97438 * 15 14 13 28 28 H 1.08002 * 120.18042 * 180.02562 * 16 15 14 29 29 H 1.08998 * 109.47421 * 178.03221 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4769 2.0537 -1.4000 5 1 1.4460 2.6489 0.7128 6 1 3.5460 1.4364 0.6873 7 6 2.0079 -1.2122 0.0005 8 1 1.5028 -2.1273 0.2722 9 6 3.3740 -1.2387 -0.3541 10 6 3.8796 -0.2981 -1.2832 11 6 5.1859 -0.3070 -1.6354 12 6 6.0650 -1.2597 -1.0782 13 6 7.4212 -1.2825 -1.4332 14 6 8.2506 -2.2137 -0.8810 15 6 7.7724 -3.1488 0.0339 16 6 6.4621 -3.1587 0.4038 17 6 5.5761 -2.2117 -0.1455 18 6 4.2235 -2.1958 0.2137 19 6 3.6870 -3.1984 1.2026 20 9 3.8456 -4.4902 0.6895 21 9 4.3884 -3.0860 2.4078 22 1 -0.4850 0.8401 -0.0004 23 1 3.2150 0.4350 -1.7158 24 1 5.5577 0.4200 -2.3421 25 1 7.8078 -0.5648 -2.1417 26 1 9.2943 -2.2270 -1.1583 27 1 8.4504 -3.8757 0.4561 28 1 6.1041 -3.8889 1.1146 29 1 2.6289 -3.0048 1.3786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309311880.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:47 Heat of formation + Delta-G solvation = -76.350634 kcal Electronic energy + Delta-G solvation = -17663.422838 eV Core-core repulsion = 14572.074223 eV Total energy + Delta-G solvation = -3091.348615 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.00687 -45.95119 -39.25074 -36.16184 -33.61195 -32.23377 -30.20141 -29.03733 -26.19068 -24.49166 -22.34171 -21.54446 -20.22001 -18.36433 -16.80270 -16.55037 -16.20957 -15.77792 -15.39257 -14.92259 -14.34217 -13.72898 -13.11162 -13.00948 -12.98214 -12.71354 -12.59417 -12.39497 -12.14449 -11.79543 -11.39653 -11.09828 -10.98513 -10.89508 -10.44628 -10.15573 -10.04308 -9.45495 -9.33865 -9.02356 -7.76065 -7.33294 -7.18816 -4.85217 1.36143 2.00260 2.72110 2.88019 3.04113 3.06557 3.61173 3.72037 4.51365 4.88179 5.08459 5.29365 5.52947 5.55942 5.67930 5.82204 5.84519 6.01544 6.20133 6.24003 6.33342 6.38838 6.62036 6.74278 6.91289 6.98957 7.18740 7.25449 7.36439 7.40602 7.75332 7.79470 7.90120 8.21614 8.37157 9.66750 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.010271 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.521625 B = 2725.472838 C = 3618.101445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.084 3.916 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.241 1.241 7 C -0.435 4.435 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.178 4.178 11 C -0.072 4.072 12 C -0.137 4.137 13 C -0.078 4.078 14 C -0.184 4.184 15 C -0.106 4.106 16 C -0.145 4.145 17 C 0.048 3.952 18 C -0.318 4.318 19 C 0.324 3.676 20 F -0.220 7.220 21 F -0.218 7.218 22 H 0.293 0.707 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 0.527 -0.766 6.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.462 4.462 8 H 0.118 0.882 9 C 0.119 3.881 10 C -0.196 4.196 11 C -0.091 4.091 12 C -0.137 4.137 13 C -0.096 4.096 14 C -0.202 4.202 15 C -0.124 4.124 16 C -0.163 4.163 17 C 0.047 3.953 18 C -0.321 4.321 19 C 0.271 3.729 20 F -0.201 7.201 21 F -0.200 7.200 22 H 0.104 0.896 23 H 0.131 0.869 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.021 0.589 -0.725 6.093 hybrid contribution 0.238 0.636 -0.044 0.681 sum 6.259 1.226 -0.769 6.424 Atomic orbital electron populations 1.69651 1.08200 1.31217 1.31276 1.26269 0.94853 1.02091 0.90703 0.86382 0.81313 0.79201 0.79626 1.18863 1.20899 1.16448 1.19648 0.92561 0.96374 1.37603 0.88157 1.17351 0.92599 0.89656 0.88517 1.21125 0.95712 1.01892 1.00881 1.20732 0.93448 0.96776 0.98101 1.17718 0.93682 0.99660 1.02666 1.20777 0.92733 0.97681 0.98373 1.20421 0.98917 0.98949 1.01950 1.20589 0.95459 0.98433 0.97882 1.21056 0.93706 0.99683 1.01894 1.17536 0.92518 0.92492 0.92715 1.19650 0.93231 1.08617 1.10594 1.20239 0.96618 0.77661 0.78347 1.92903 1.97133 1.42407 1.87684 1.92893 1.82590 1.96051 1.48428 0.89614 0.86854 0.87263 0.87234 0.87691 0.87571 0.86660 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.65 13.93 55.55 0.77 -17.88 15 2 C 0.08 1.97 5.41 -17.34 -0.09 1.87 15 3 Si 0.91 18.60 24.52 -169.99 -4.17 14.44 15 4 H -0.26 -5.09 6.49 56.52 0.37 -4.72 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.24 -5.17 7.02 56.52 0.40 -4.78 15 7 C -0.44 -10.61 8.66 -37.82 -0.33 -10.93 15 8 H 0.10 2.51 6.63 -52.49 -0.35 2.16 15 9 C 0.12 2.91 5.09 -106.87 -0.54 2.37 15 10 C -0.18 -3.92 7.11 -39.37 -0.28 -4.20 15 11 C -0.07 -1.46 9.71 -39.55 -0.38 -1.85 15 12 C -0.14 -2.88 5.75 -106.65 -0.61 -3.50 15 13 C -0.08 -1.40 9.74 -39.51 -0.39 -1.79 15 14 C -0.18 -3.16 9.95 -39.86 -0.40 -3.56 15 15 C -0.11 -1.91 9.95 -39.94 -0.40 -2.30 15 16 C -0.15 -3.01 8.82 -39.35 -0.35 -3.36 15 17 C 0.05 1.08 5.72 -106.84 -0.61 0.47 15 18 C -0.32 -7.46 5.47 -103.32 -0.57 -8.03 15 19 C 0.32 7.07 4.77 36.00 0.17 7.25 15 20 F -0.22 -4.77 16.27 2.25 0.04 -4.73 15 21 F -0.22 -4.73 15.93 2.25 0.04 -4.69 15 22 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 23 H 0.11 2.38 4.55 -52.49 -0.24 2.15 15 24 H 0.11 1.83 8.06 -52.49 -0.42 1.41 15 25 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 26 H 0.10 1.48 8.06 -52.49 -0.42 1.06 15 27 H 0.11 1.61 8.06 -52.48 -0.42 1.18 15 28 H 0.12 2.37 5.88 -52.49 -0.31 2.06 15 29 H 0.12 2.47 5.76 -51.93 -0.30 2.17 15 LS Contribution 250.76 15.07 3.78 3.78 Total: -1.00 -25.56 250.76 -6.38 -31.94 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -2.06 Total: 4.71 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -4.77 Total: -27.56 kcal Atomic # 7 Polarization: -18.65 SS G_CDS: 0.77 Total: -17.88 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.17 Total: 14.44 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.56 -6.38 -31.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309311880.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.410 kcal (2) G-P(sol) polarization free energy of solvation -25.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds