Wall clock time and date at job start Mon Mar 30 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00434 * 2 1 4 4 H 1.48498 * 109.47263 * 240.00105 * 3 2 1 5 5 H 1.48507 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47662 * 119.99502 * 3 2 1 7 7 C 1.40154 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00360 * 195.02810 * 7 2 1 9 9 C 1.40449 * 119.99836 * 15.03071 * 7 2 1 10 10 C 1.40537 * 120.71883 * 25.38928 * 9 7 2 11 11 C 1.38156 * 120.42030 * 180.23100 * 10 9 7 12 12 C 1.37672 * 121.79796 * 359.46310 * 11 10 9 13 13 C 1.40642 * 120.79788 * 0.28630 * 12 11 10 14 14 C 1.40508 * 121.17558 * 179.97438 * 13 12 11 15 15 C 1.36330 * 119.77234 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.53230 * 179.97438 * 15 14 13 17 17 F 1.39903 * 109.47270 * 209.99893 * 16 15 14 18 18 F 1.39900 * 109.47640 * 329.99986 * 16 15 14 19 19 C 1.39077 * 120.93436 * 359.97438 * 15 14 13 20 20 C 1.37678 * 120.71497 * 0.02562 * 19 15 14 21 21 C 1.39537 * 119.55698 * 359.97420 * 20 19 15 22 22 H 0.97002 * 119.99345 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.78616 * 359.95286 * 10 9 7 24 24 H 1.07999 * 119.09583 * 179.74865 * 11 10 9 25 25 H 1.08002 * 119.59684 * 180.25084 * 12 11 10 26 26 H 1.08004 * 120.11115 * 359.97438 * 14 13 12 27 27 H 1.09001 * 109.47248 * 89.99898 * 16 15 14 28 28 H 1.08001 * 119.64609 * 179.97438 * 19 15 14 29 29 H 1.08000 * 120.22682 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0081 -1.2138 0.0005 8 1 3.0604 -1.2297 0.2431 9 6 1.3419 -2.4094 -0.3144 10 6 0.1886 -2.3986 -1.1174 11 6 -0.4646 -3.5779 -1.4194 12 6 -0.0128 -4.7952 -0.9618 13 6 1.1380 -4.8802 -0.1578 14 6 1.6058 -6.1183 0.3140 15 6 2.7249 -6.1676 1.0911 16 6 3.2215 -7.4983 1.5946 17 9 3.8672 -7.3206 2.8230 18 9 2.1385 -8.3686 1.7587 19 6 3.4146 -5.0072 1.4257 20 6 2.9821 -3.7786 0.9794 21 6 1.8396 -3.6989 0.1824 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1919 -1.4619 -1.4972 24 1 -1.3513 -3.5443 -2.0351 25 1 -0.5490 -5.6956 -1.2230 26 1 1.0807 -7.0277 0.0618 27 1 3.9215 -7.9212 0.8740 28 1 4.2985 -5.0703 2.0430 29 1 3.5236 -2.8825 1.2444 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309552144.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:13 Heat of formation + Delta-G solvation = -91.793329 kcal Electronic energy + Delta-G solvation = -16974.447655 eV Core-core repulsion = 13882.429394 eV Total energy + Delta-G solvation = -3092.018260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.91103 -47.93374 -40.54883 -37.33837 -35.54392 -33.25303 -31.49606 -30.38573 -27.20939 -26.71645 -23.86253 -22.69975 -22.27187 -19.36668 -18.37720 -18.24861 -17.99953 -17.82544 -17.03899 -16.36448 -15.64228 -15.21576 -14.80901 -14.48886 -14.42105 -14.26803 -14.12668 -13.81259 -13.64580 -13.32118 -13.09385 -12.76232 -12.55428 -12.20219 -12.12781 -11.70084 -11.33720 -11.24278 -11.18640 -10.34359 -9.26825 -8.86103 -8.65170 -6.36387 -0.02568 0.40548 1.22843 1.37630 1.50214 1.63635 2.12832 2.30421 2.77568 2.93796 3.33538 3.70607 3.73053 4.10784 4.15751 4.29566 4.43057 4.59884 4.62057 4.80188 4.92012 5.03031 5.12903 5.36812 5.47684 5.58452 5.61023 5.71435 5.98719 6.09211 6.22036 6.28330 6.58275 6.72541 6.88796 8.12387 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031524 B = 0.006282 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.008431 B = 4455.875200 C = 5220.180000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.031 3.969 3 Si 0.991 3.009 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.452 4.452 8 H 0.094 0.906 9 C 0.094 3.906 10 C -0.255 4.255 11 C -0.061 4.061 12 C -0.283 4.283 13 C -0.021 4.021 14 C -0.119 4.119 15 C -0.160 4.160 16 C 0.319 3.681 17 F -0.209 7.209 18 F -0.211 7.211 19 C -0.158 4.158 20 C -0.078 4.078 21 C -0.137 4.137 22 H 0.296 0.704 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.162 0.838 28 H 0.140 0.860 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 -5.556 0.756 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.188 4.188 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.478 4.478 8 H 0.112 0.888 9 C 0.091 3.909 10 C -0.275 4.275 11 C -0.080 4.080 12 C -0.302 4.302 13 C -0.021 4.021 14 C -0.137 4.137 15 C -0.161 4.161 16 C 0.266 3.734 17 F -0.190 7.190 18 F -0.193 7.193 19 C -0.177 4.177 20 C -0.096 4.096 21 C -0.137 4.137 22 H 0.107 0.893 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.179 0.821 28 H 0.158 0.842 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.575 -5.421 0.814 7.819 hybrid contribution -0.314 0.815 0.038 0.874 sum 5.261 -4.606 0.852 7.044 Atomic orbital electron populations 1.69842 1.09450 1.31602 1.31013 1.27025 0.95582 1.05080 0.91098 0.85099 0.78758 0.74593 0.80529 1.18054 1.19016 1.17764 1.19933 0.97993 0.91513 1.38402 0.88810 1.19002 0.92193 0.91202 0.88520 1.21088 1.02290 0.97066 1.07061 1.20804 0.97495 0.92831 0.96825 1.20559 1.01488 0.97164 1.10993 1.18030 0.95164 0.92432 0.96475 1.20771 0.96563 0.97033 0.99346 1.20162 0.98500 0.95204 1.02251 1.20615 0.83250 0.86456 0.83102 1.92949 1.81791 1.96010 1.48266 1.92951 1.58746 1.71324 1.96231 1.20711 1.02119 0.90993 1.03834 1.21183 0.94754 0.97910 0.95726 1.19601 0.98426 0.93584 1.02123 0.89262 0.87704 0.87428 0.86738 0.84685 0.82135 0.84186 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.24 10.86 21.86 0.24 -39.00 15 2 C 0.03 1.46 5.20 85.32 0.44 1.90 15 3 Si 0.99 34.77 29.59 68.60 2.03 36.80 15 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 5 H -0.27 -8.87 7.11 99.48 0.71 -8.16 15 6 H -0.25 -8.54 7.11 99.48 0.71 -7.84 15 7 C -0.45 -22.62 8.51 23.27 0.20 -22.42 15 8 H 0.09 4.36 6.71 -2.91 -0.02 4.34 15 9 C 0.09 4.95 5.73 -19.92 -0.11 4.84 15 10 C -0.26 -13.39 8.69 22.81 0.20 -13.20 15 11 C -0.06 -2.90 9.92 22.12 0.22 -2.68 15 12 C -0.28 -12.82 9.77 22.72 0.22 -12.60 15 13 C -0.02 -0.96 5.74 -21.33 -0.12 -1.09 15 14 C -0.12 -4.58 9.09 22.38 0.20 -4.38 15 15 C -0.16 -5.53 5.71 -20.11 -0.11 -5.65 15 16 C 0.32 8.44 5.64 71.24 0.40 8.84 15 17 F -0.21 -5.91 16.44 44.97 0.74 -5.17 15 18 F -0.21 -6.13 16.42 44.97 0.74 -5.39 15 19 C -0.16 -5.71 9.36 22.34 0.21 -5.50 15 20 C -0.08 -3.29 9.46 22.45 0.21 -3.08 15 21 C -0.14 -6.69 5.90 -19.89 -0.12 -6.80 15 22 H 0.30 13.04 8.29 -92.71 -0.77 12.27 15 23 H 0.11 5.67 6.12 -2.91 -0.02 5.65 15 24 H 0.11 4.47 8.06 -2.91 -0.02 4.45 15 25 H 0.11 4.52 8.06 -2.91 -0.02 4.50 15 26 H 0.14 4.57 7.54 -2.91 -0.02 4.55 15 27 H 0.16 2.85 8.14 -2.39 -0.02 2.83 15 28 H 0.14 4.22 7.56 -2.91 -0.02 4.20 15 29 H 0.13 5.08 6.65 -2.91 -0.02 5.06 15 Total: -1.00 -57.58 260.47 6.77 -50.81 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 1.18 Total: 23.76 kcal Atomic # 6 Polarization: -63.65 SS G_CDS: 1.84 Total: -61.81 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.24 Total: -39.00 kcal Atomic # 9 Polarization: -12.04 SS G_CDS: 1.48 Total: -10.56 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -57.58 6.77 -50.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309552144.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.983 kcal (2) G-P(sol) polarization free energy of solvation -57.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds