Wall clock time and date at job start Mon Mar 30 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86794 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47084 * 299.99723 * 3 2 1 6 6 H 1.48496 * 109.47289 * 59.99917 * 3 2 1 7 7 C 1.39980 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00352 * 163.86472 * 7 2 1 9 9 C 1.41162 * 119.99638 * 343.87002 * 7 2 1 10 10 C 1.41542 * 119.87435 * 334.09186 * 9 7 2 11 11 C 1.35293 * 120.75854 * 179.74835 * 10 9 7 12 12 C 1.41111 * 120.21292 * 359.97438 * 11 10 9 13 13 C 1.40196 * 120.91004 * 180.02562 * 12 11 10 14 14 C 1.36396 * 119.78447 * 179.97438 * 13 12 11 15 15 C 1.39295 * 121.03414 * 359.97438 * 14 13 12 16 16 C 1.36152 * 120.91136 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.17601 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.47252 * 121.06413 * 17 16 15 19 19 F 1.39906 * 109.46974 * 241.05810 * 17 16 15 20 20 C 1.40841 * 119.64410 * 0.03953 * 16 15 14 21 21 C 1.39947 * 121.02727 * 179.97438 * 20 16 15 22 22 H 0.96997 * 120.00044 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.62146 * 359.72780 * 10 9 7 24 24 H 1.07995 * 119.89389 * 179.97438 * 11 10 9 25 25 H 1.07996 * 120.10970 * 359.95661 * 13 12 11 26 26 H 1.07995 * 119.48260 * 180.02562 * 14 13 12 27 27 H 1.08000 * 119.54214 * 180.02562 * 15 14 13 28 28 H 1.08995 * 109.47433 * 1.06072 * 17 16 15 29 29 H 1.08003 * 120.32828 * 359.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8835 2.3963 -1.2125 6 1 1.8834 2.3964 1.2124 7 6 2.0081 -1.2122 0.0005 8 1 3.0561 -1.2308 -0.2594 9 6 1.3439 -2.4105 0.3407 10 6 0.2040 -2.3713 1.1788 11 6 -0.4492 -3.5083 1.5121 12 6 0.0001 -4.7541 1.0251 13 6 -0.6660 -5.9412 1.3607 14 6 -0.2121 -7.1329 0.8766 15 6 0.9072 -7.1926 0.0497 16 6 1.5801 -6.0617 -0.2994 17 6 2.7888 -6.1455 -1.1956 18 9 2.5702 -5.3800 -2.3462 19 9 3.9086 -5.6552 -0.5152 20 6 1.1406 -4.8131 0.1817 21 6 1.8107 -3.6325 -0.1583 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1482 -1.4229 1.5569 24 1 -1.3173 -3.4622 2.1529 25 1 -1.5354 -5.9123 2.0007 26 1 -0.7292 -8.0443 1.1379 27 1 1.2454 -8.1492 -0.3204 28 1 2.9608 -7.1842 -1.4775 29 1 2.6800 -3.6638 -0.7984 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309572358.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:11 Heat of formation + Delta-G solvation = -77.525283 kcal Electronic energy + Delta-G solvation = -17347.928450 eV Core-core repulsion = 14256.528899 eV Total energy + Delta-G solvation = -3091.399551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.33168 -46.28591 -39.02644 -35.93670 -33.42707 -32.11774 -29.55286 -28.82797 -26.05701 -24.71964 -21.98131 -21.49805 -20.24104 -18.00805 -16.76072 -16.57584 -16.53089 -15.68097 -15.43203 -14.83396 -14.34068 -13.28517 -13.25494 -12.97547 -12.69795 -12.68181 -12.41001 -12.25907 -11.90621 -11.60087 -11.34113 -11.27149 -11.11831 -10.72946 -10.30814 -10.13518 -9.82967 -9.47646 -9.31770 -8.87136 -7.50943 -7.15485 -6.85479 -4.54055 1.48452 2.19535 2.86782 2.96023 3.02743 3.24936 3.75444 3.88149 4.38553 4.61289 4.79887 5.21156 5.47598 5.56232 5.71231 5.77135 5.92074 6.10189 6.36291 6.48224 6.63943 6.78457 6.91292 6.98160 7.09803 7.17407 7.31202 7.46822 7.71990 7.82781 7.91282 8.04354 8.33114 8.63611 8.69855 9.88877 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.007821 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.757543 B = 3579.384480 C = 4438.648204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.120 3.880 10 C -0.102 4.102 11 C -0.122 4.122 12 C -0.131 4.131 13 C -0.057 4.057 14 C -0.206 4.206 15 C -0.071 4.071 16 C -0.211 4.211 17 C 0.323 3.677 18 F -0.202 7.202 19 F -0.204 7.204 20 C 0.037 3.963 21 C -0.273 4.273 22 H 0.286 0.714 23 H 0.124 0.876 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -6.232 0.685 6.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.117 3.883 10 C -0.120 4.120 11 C -0.140 4.140 12 C -0.132 4.132 13 C -0.075 4.075 14 C -0.225 4.225 15 C -0.089 4.089 16 C -0.212 4.212 17 C 0.269 3.731 18 F -0.184 7.184 19 F -0.185 7.185 20 C 0.037 3.963 21 C -0.293 4.293 22 H 0.097 0.903 23 H 0.142 0.858 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.437 -6.008 0.654 6.059 hybrid contribution 0.253 0.827 -0.096 0.871 sum 0.690 -5.180 0.558 5.256 Atomic orbital electron populations 1.69791 1.07820 1.30020 1.32974 1.26101 0.94880 1.01997 0.91874 0.86115 0.81105 0.79993 0.78837 1.18003 1.19618 1.19399 1.19857 0.98015 0.90811 1.37647 0.89518 1.17687 0.90223 0.92694 0.87705 1.21341 0.96254 0.97396 0.97022 1.20638 0.99771 0.92228 1.01380 1.17770 0.98219 0.93351 1.03829 1.20905 0.97388 0.92376 0.96856 1.20228 1.00086 0.97290 1.04870 1.20257 0.95379 0.96051 0.97225 1.19962 0.99857 0.95117 1.06227 1.20189 0.82355 0.91813 0.78742 1.92988 1.95040 1.79082 1.51242 1.92977 1.54481 1.90281 1.80793 1.17473 0.93306 0.92005 0.93553 1.20969 1.06225 0.91452 1.10680 0.90250 0.85785 0.88096 0.87317 0.87539 0.87486 0.88082 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.07 10.92 55.55 0.61 -18.46 15 2 C 0.07 1.70 5.15 -17.33 -0.09 1.61 15 3 Si 0.92 17.75 29.59 -169.99 -5.03 12.73 15 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.27 -5.08 7.11 56.52 0.40 -4.67 15 7 C -0.44 -11.25 9.02 -37.82 -0.34 -11.59 15 8 H 0.09 2.18 7.90 -52.49 -0.41 1.77 15 9 C 0.12 3.17 5.56 -106.87 -0.59 2.57 15 10 C -0.10 -2.53 8.55 -39.37 -0.34 -2.86 15 11 C -0.12 -2.76 9.71 -39.54 -0.38 -3.14 15 12 C -0.13 -2.97 5.75 -106.64 -0.61 -3.58 15 13 C -0.06 -1.09 9.75 -39.51 -0.39 -1.47 15 14 C -0.21 -3.60 9.95 -39.85 -0.40 -3.99 15 15 C -0.07 -1.25 9.58 -39.94 -0.38 -1.63 15 16 C -0.21 -4.31 5.38 -104.39 -0.56 -4.87 15 17 C 0.32 5.90 4.93 36.01 0.18 6.08 15 18 F -0.20 -4.12 16.02 2.25 0.04 -4.09 15 19 F -0.20 -4.07 16.20 2.25 0.04 -4.03 15 20 C 0.04 0.88 5.72 -106.85 -0.61 0.27 15 21 C -0.27 -7.03 8.59 -38.28 -0.33 -7.36 15 22 H 0.29 6.25 8.30 -40.82 -0.34 5.91 15 23 H 0.12 3.08 6.15 -52.49 -0.32 2.76 15 24 H 0.10 1.98 8.06 -52.49 -0.42 1.55 15 25 H 0.11 1.77 8.06 -52.49 -0.42 1.34 15 26 H 0.11 1.52 8.06 -52.49 -0.42 1.10 15 27 H 0.11 1.47 7.91 -52.49 -0.41 1.06 15 28 H 0.10 1.36 7.85 -51.93 -0.41 0.96 15 29 H 0.10 2.68 5.88 -52.48 -0.31 2.37 15 LS Contribution 259.84 15.07 3.92 3.92 Total: -1.00 -27.57 259.84 -7.55 -35.13 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.27 Total: 4.78 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -4.85 Total: -29.97 kcal Atomic # 7 Polarization: -19.07 SS G_CDS: 0.61 Total: -18.46 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.07 Total: -8.12 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.57 -7.55 -35.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309572358.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.398 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds