Wall clock time and date at job start Mon Mar 30 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86794 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47084 * 299.99723 * 3 2 1 6 6 H 1.48496 * 109.47289 * 59.99917 * 3 2 1 7 7 C 1.39980 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00352 * 163.86472 * 7 2 1 9 9 C 1.41162 * 119.99638 * 343.87002 * 7 2 1 10 10 C 1.41542 * 119.87435 * 334.09186 * 9 7 2 11 11 C 1.35293 * 120.75854 * 179.74835 * 10 9 7 12 12 C 1.41111 * 120.21292 * 359.97438 * 11 10 9 13 13 C 1.40196 * 120.91004 * 180.02562 * 12 11 10 14 14 C 1.36396 * 119.78447 * 179.97438 * 13 12 11 15 15 C 1.39295 * 121.03414 * 359.97438 * 14 13 12 16 16 C 1.36152 * 120.91136 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.17601 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.47252 * 121.06413 * 17 16 15 19 19 F 1.39906 * 109.46974 * 241.05810 * 17 16 15 20 20 C 1.40841 * 119.64410 * 0.03953 * 16 15 14 21 21 C 1.39947 * 121.02727 * 179.97438 * 20 16 15 22 22 H 0.96997 * 120.00044 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.62146 * 359.72780 * 10 9 7 24 24 H 1.07995 * 119.89389 * 179.97438 * 11 10 9 25 25 H 1.07996 * 120.10970 * 359.95661 * 13 12 11 26 26 H 1.07995 * 119.48260 * 180.02562 * 14 13 12 27 27 H 1.08000 * 119.54214 * 180.02562 * 15 14 13 28 28 H 1.08995 * 109.47433 * 1.06072 * 17 16 15 29 29 H 1.08003 * 120.32828 * 359.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8835 2.3963 -1.2125 6 1 1.8834 2.3964 1.2124 7 6 2.0081 -1.2122 0.0005 8 1 3.0561 -1.2308 -0.2594 9 6 1.3439 -2.4105 0.3407 10 6 0.2040 -2.3713 1.1788 11 6 -0.4492 -3.5083 1.5121 12 6 0.0001 -4.7541 1.0251 13 6 -0.6660 -5.9412 1.3607 14 6 -0.2121 -7.1329 0.8766 15 6 0.9072 -7.1926 0.0497 16 6 1.5801 -6.0617 -0.2994 17 6 2.7888 -6.1455 -1.1956 18 9 2.5702 -5.3800 -2.3462 19 9 3.9086 -5.6552 -0.5152 20 6 1.1406 -4.8131 0.1817 21 6 1.8107 -3.6325 -0.1583 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1482 -1.4229 1.5569 24 1 -1.3173 -3.4622 2.1529 25 1 -1.5354 -5.9123 2.0007 26 1 -0.7292 -8.0443 1.1379 27 1 1.2454 -8.1492 -0.3204 28 1 2.9608 -7.1842 -1.4775 29 1 2.6800 -3.6638 -0.7984 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309572358.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:11 Heat of formation + Delta-G solvation = -91.125843 kcal Electronic energy + Delta-G solvation = -17348.518214 eV Core-core repulsion = 14256.528899 eV Total energy + Delta-G solvation = -3091.989316 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.83170 -47.81228 -40.67573 -37.63257 -35.16104 -33.73334 -31.26556 -30.52843 -27.72191 -26.30923 -23.66444 -23.19493 -21.86794 -19.74180 -18.28906 -18.15087 -18.04283 -17.28871 -17.16285 -16.40362 -15.95390 -14.93146 -14.80774 -14.63159 -14.32318 -14.22323 -14.08240 -13.93306 -13.45981 -13.25332 -13.00775 -12.83508 -12.68659 -12.30464 -11.90759 -11.81656 -11.51298 -11.15628 -11.04851 -10.53551 -9.24295 -8.90097 -8.57747 -6.44239 -0.12104 0.55554 1.29250 1.34665 1.49989 1.50770 2.13925 2.22513 2.90076 3.04603 3.41625 3.67441 3.79270 4.19544 4.26866 4.29377 4.44266 4.49321 4.73565 4.87734 4.96419 5.05800 5.10674 5.27095 5.46700 5.62924 5.64983 5.71138 5.94890 5.98483 6.24435 6.29861 6.47408 6.78797 6.85439 8.16604 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.007821 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.757543 B = 3579.384480 C = 4438.648204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.484 4.484 8 H 0.073 0.927 9 C 0.090 3.910 10 C -0.132 4.132 11 C -0.114 4.114 12 C -0.157 4.157 13 C -0.063 4.063 14 C -0.187 4.187 15 C -0.055 4.055 16 C -0.233 4.233 17 C 0.313 3.687 18 F -0.221 7.221 19 F -0.220 7.220 20 C 0.009 3.991 21 C -0.298 4.298 22 H 0.296 0.704 23 H 0.115 0.885 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.155 0.845 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 -9.103 1.172 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.091 0.909 9 C 0.087 3.913 10 C -0.151 4.151 11 C -0.132 4.132 12 C -0.157 4.157 13 C -0.081 4.081 14 C -0.205 4.205 15 C -0.073 4.073 16 C -0.234 4.234 17 C 0.260 3.740 18 F -0.202 7.202 19 F -0.201 7.201 20 C 0.008 3.992 21 C -0.318 4.318 22 H 0.107 0.893 23 H 0.133 0.867 24 H 0.149 0.851 25 H 0.159 0.841 26 H 0.172 0.828 27 H 0.178 0.822 28 H 0.182 0.818 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.580 -8.902 1.143 8.994 hybrid contribution 0.469 1.305 -0.225 1.405 sum -0.111 -7.597 0.918 7.653 Atomic orbital electron populations 1.69814 1.09000 1.31348 1.33697 1.26871 0.95638 1.04708 0.90763 0.85063 0.79170 0.75474 0.79480 1.18516 1.18631 1.17957 1.19958 0.97795 0.92391 1.41024 0.90922 1.18021 0.91375 0.93268 0.88616 1.21267 0.97189 0.98016 0.98626 1.21007 0.99812 0.91853 1.00540 1.18143 0.98583 0.94797 1.04220 1.21298 0.98088 0.91551 0.97151 1.20893 0.99067 0.98341 1.02188 1.20901 0.94123 0.97067 0.95235 1.20356 1.01244 0.94847 1.06936 1.20865 0.81227 0.94131 0.77762 1.92948 1.95109 1.80026 1.52150 1.92942 1.55199 1.90790 1.81202 1.17853 0.93990 0.92837 0.94475 1.20993 1.06507 0.92782 1.11558 0.89327 0.86742 0.85096 0.84088 0.82772 0.82226 0.81833 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.66 10.92 21.83 0.24 -41.42 15 2 C 0.04 1.85 5.15 85.27 0.44 2.29 15 3 Si 0.99 37.96 29.59 68.60 2.03 39.99 15 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 15 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 7 C -0.48 -27.06 9.02 23.41 0.21 -26.85 15 8 H 0.07 4.04 7.90 -2.91 -0.02 4.02 15 9 C 0.09 5.10 5.56 -21.32 -0.12 4.98 15 10 C -0.13 -6.95 8.55 22.41 0.19 -6.76 15 11 C -0.11 -5.22 9.71 22.30 0.22 -5.00 15 12 C -0.16 -6.97 5.75 -21.17 -0.12 -7.09 15 13 C -0.06 -2.15 9.75 22.32 0.22 -1.93 15 14 C -0.19 -5.36 9.95 22.09 0.22 -5.14 15 15 C -0.06 -1.64 9.58 22.04 0.21 -1.43 15 16 C -0.23 -9.03 5.38 -19.71 -0.11 -9.14 15 17 C 0.31 10.92 4.93 71.24 0.35 11.27 15 18 F -0.22 -9.06 16.02 44.97 0.72 -8.34 15 19 F -0.22 -8.80 16.20 44.97 0.73 -8.08 15 20 C 0.01 0.42 5.72 -21.30 -0.12 0.29 15 21 C -0.30 -16.35 8.59 23.11 0.20 -16.15 15 22 H 0.30 13.38 8.30 -92.71 -0.77 12.61 15 23 H 0.11 6.06 6.15 -2.91 -0.02 6.05 15 24 H 0.13 4.99 8.06 -2.91 -0.02 4.97 15 25 H 0.14 3.86 8.06 -2.91 -0.02 3.84 15 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 15 27 H 0.16 3.10 7.91 -2.91 -0.02 3.08 15 28 H 0.16 3.64 7.85 -2.39 -0.02 3.62 15 29 H 0.08 4.76 5.88 -2.91 -0.02 4.74 15 Total: -1.00 -65.90 259.84 6.69 -59.22 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.18 Total: 19.30 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 1.79 Total: -60.66 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.24 Total: -41.42 kcal Atomic # 9 Polarization: -17.87 SS G_CDS: 1.45 Total: -16.42 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -65.90 6.69 -59.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309572358.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.910 kcal (2) G-P(sol) polarization free energy of solvation -65.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds