Wall clock time and date at job start Mon Mar 30 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86799 * 120.00269 * 2 1 4 4 H 1.48492 * 109.47572 * 239.99874 * 3 2 1 5 5 H 1.48497 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47019 * 119.99662 * 3 2 1 7 7 C 1.39974 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00047 * 197.90227 * 7 2 1 9 9 C 1.41158 * 119.99854 * 17.90885 * 7 2 1 10 10 C 1.40035 * 119.87356 * 204.93326 * 9 7 2 11 11 C 1.39921 * 119.33971 * 180.02562 * 10 9 7 12 12 C 1.40858 * 121.02467 * 179.97438 * 11 10 9 13 13 C 1.36152 * 119.63381 * 179.97438 * 12 11 10 14 14 C 1.39291 * 120.92086 * 0.04753 * 13 12 11 15 15 C 1.36395 * 121.03742 * 359.97083 * 14 13 12 16 16 C 1.40207 * 119.78497 * 0.02562 * 15 14 13 17 17 C 1.41063 * 120.91210 * 179.97438 * 16 15 14 18 18 C 1.50707 * 119.89289 * 0.02562 * 17 16 15 19 19 F 1.39904 * 109.46934 * 60.00061 * 18 17 16 20 20 F 1.39898 * 109.47174 * 300.00032 * 18 17 16 21 21 C 1.35315 * 120.21521 * 180.28136 * 17 16 15 22 22 H 0.97007 * 120.00189 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.33140 * 0.02562 * 10 9 7 24 24 H 1.08004 * 120.18290 * 0.02562 * 12 11 10 25 25 H 1.08006 * 119.53516 * 180.02562 * 13 12 11 26 26 H 1.08006 * 119.48284 * 179.97438 * 14 13 12 27 27 H 1.07994 * 120.10757 * 180.02562 * 15 14 13 28 28 H 1.08995 * 109.47122 * 179.97438 * 18 17 16 29 29 H 1.08006 * 119.62348 * 179.74543 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6963 1.2126 7 6 2.0079 -1.2122 0.0005 8 1 3.0487 -1.2348 0.2881 9 6 1.3534 -2.4052 -0.3748 10 6 1.8240 -3.6370 0.0963 11 6 1.1670 -4.8126 -0.2832 12 6 1.6105 -6.0707 0.1694 13 6 0.9496 -7.1965 -0.2172 14 6 -0.1601 -7.1227 -1.0560 15 6 -0.6170 -5.9218 -1.5137 16 6 0.0360 -4.7392 -1.1384 17 6 -0.4159 -3.4846 -1.5982 18 6 -1.6168 -3.4051 -2.5053 19 9 -2.7295 -3.9490 -1.8545 20 9 -1.3642 -4.1253 -3.6777 21 6 0.2285 -2.3525 -1.2317 22 1 -0.4851 0.8401 -0.0004 23 1 2.6856 -3.6793 0.7462 24 1 2.4695 -6.1417 0.8201 25 1 1.2907 -8.1603 0.1311 26 1 -0.6666 -8.0306 -1.3485 27 1 -1.4790 -5.8820 -2.1631 28 1 -1.8156 -2.3628 -2.7544 29 1 -0.1233 -1.3973 -1.5927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380494458.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:50 Heat of formation + Delta-G solvation = -79.263603 kcal Electronic energy + Delta-G solvation = -17403.819644 eV Core-core repulsion = 14312.344714 eV Total energy + Delta-G solvation = -3091.474931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.40704 -46.34665 -39.03571 -35.96811 -33.58938 -32.02084 -29.52820 -29.02073 -25.73844 -24.93726 -22.11152 -21.57256 -20.20934 -17.95923 -17.05252 -16.58840 -16.10531 -15.90823 -15.48280 -14.85350 -14.38245 -13.34475 -13.31844 -13.14316 -12.76307 -12.75777 -12.42232 -12.13003 -12.05839 -11.70921 -11.31794 -11.27324 -10.94747 -10.80325 -10.46131 -10.19772 -9.88889 -9.55622 -9.40002 -8.84731 -7.56448 -7.22126 -6.93957 -4.60409 1.55722 2.20111 2.85880 2.91242 2.94300 3.08316 3.69514 3.85263 4.42705 4.64588 4.90146 5.27760 5.32824 5.67812 5.73304 5.79754 5.89910 6.20184 6.34793 6.48602 6.62308 6.70157 6.80339 6.90609 7.08867 7.25160 7.32368 7.38961 7.55040 7.67795 7.93882 7.96763 8.18431 8.52307 8.57647 9.82484 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.008166 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.736182 B = 3428.073534 C = 4341.198758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.087 0.913 9 C 0.109 3.891 10 C -0.258 4.258 11 C 0.008 3.992 12 C -0.145 4.145 13 C -0.115 4.115 14 C -0.183 4.183 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.170 4.170 18 C 0.315 3.685 19 F -0.207 7.207 20 F -0.209 7.209 21 C -0.059 4.059 22 H 0.289 0.711 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -1.933 -2.483 3.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.471 4.471 8 H 0.105 0.895 9 C 0.106 3.894 10 C -0.279 4.279 11 C 0.008 3.992 12 C -0.164 4.164 13 C -0.133 4.133 14 C -0.202 4.202 15 C -0.099 4.099 16 C -0.105 4.105 17 C -0.171 4.171 18 C 0.261 3.739 19 F -0.188 7.188 20 F -0.190 7.190 21 C -0.078 4.078 22 H 0.100 0.900 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.075 -1.774 -2.483 3.236 hybrid contribution 0.192 0.643 0.069 0.675 sum -0.883 -1.131 -2.414 2.808 Atomic orbital electron populations 1.69755 1.07808 1.30374 1.33264 1.26069 0.94861 1.01973 0.91774 0.86211 0.80146 0.79288 0.80388 1.18471 1.20041 1.18621 1.19688 0.98553 0.90830 1.38036 0.89487 1.17516 0.90236 0.92946 0.88718 1.20948 1.05937 0.91272 1.09712 1.17790 0.93470 0.93417 0.94508 1.20864 1.00748 0.92152 1.02598 1.20522 0.96497 0.97419 0.98910 1.20362 0.99697 0.96871 1.03271 1.20899 0.98262 0.92418 0.98297 1.17374 0.98337 0.91796 1.02980 1.19795 0.98602 0.95073 1.03637 1.20467 0.82613 0.92523 0.78285 1.92950 1.55238 1.88480 1.82130 1.92944 1.94573 1.81404 1.50126 1.21165 0.95350 0.96201 0.95067 0.90033 0.87946 0.87223 0.87887 0.87956 0.87358 0.87262 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.29 10.97 55.55 0.61 -17.68 15 2 C 0.07 1.65 5.12 -17.34 -0.09 1.56 15 3 Si 0.92 16.89 29.60 -169.99 -5.03 11.86 15 4 H -0.26 -4.78 7.11 56.52 0.40 -4.37 15 5 H -0.28 -4.95 7.11 56.52 0.40 -4.55 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.44 -10.73 9.01 -37.82 -0.34 -11.07 15 8 H 0.09 2.02 7.91 -52.49 -0.42 1.60 15 9 C 0.11 2.71 5.56 -106.87 -0.59 2.11 15 10 C -0.26 -6.21 9.54 -38.28 -0.37 -6.57 15 11 C 0.01 0.19 5.74 -106.84 -0.61 -0.42 15 12 C -0.15 -2.96 9.77 -39.34 -0.38 -3.34 15 13 C -0.12 -2.15 9.95 -39.94 -0.40 -2.55 15 14 C -0.18 -3.52 9.95 -39.85 -0.40 -3.91 15 15 C -0.08 -1.71 8.78 -39.51 -0.35 -2.05 15 16 C -0.10 -2.41 5.73 -106.65 -0.61 -3.03 15 17 C -0.17 -3.83 5.36 -104.59 -0.56 -4.40 15 18 C 0.31 6.06 4.92 36.01 0.18 6.24 15 19 F -0.21 -4.10 16.07 2.25 0.04 -4.06 15 20 F -0.21 -4.03 16.07 2.25 0.04 -3.99 15 21 C -0.06 -1.40 8.19 -39.38 -0.32 -1.73 15 22 H 0.29 6.05 8.30 -40.82 -0.34 5.71 15 23 H 0.10 2.32 8.06 -52.48 -0.42 1.89 15 24 H 0.11 1.98 8.06 -52.48 -0.42 1.56 15 25 H 0.10 1.59 8.06 -52.48 -0.42 1.16 15 26 H 0.10 1.67 8.06 -52.48 -0.42 1.25 15 27 H 0.11 2.19 5.82 -52.49 -0.31 1.88 15 28 H 0.11 1.80 7.82 -51.93 -0.41 1.39 15 29 H 0.13 2.97 5.98 -52.48 -0.31 2.66 15 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -25.82 259.71 -7.55 -33.36 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -2.27 Total: 5.76 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -4.85 Total: -29.16 kcal Atomic # 7 Polarization: -18.29 SS G_CDS: 0.61 Total: -17.68 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 0.07 Total: -8.05 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -25.82 -7.55 -33.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380494458.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.901 kcal (2) G-P(sol) polarization free energy of solvation -25.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds