Wall clock time and date at job start Mon Mar 30 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86799 * 120.00269 * 2 1 4 4 H 1.48492 * 109.47572 * 239.99874 * 3 2 1 5 5 H 1.48497 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47019 * 119.99662 * 3 2 1 7 7 C 1.39974 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00047 * 197.90227 * 7 2 1 9 9 C 1.41158 * 119.99854 * 17.90885 * 7 2 1 10 10 C 1.40035 * 119.87356 * 204.93326 * 9 7 2 11 11 C 1.39921 * 119.33971 * 180.02562 * 10 9 7 12 12 C 1.40858 * 121.02467 * 179.97438 * 11 10 9 13 13 C 1.36152 * 119.63381 * 179.97438 * 12 11 10 14 14 C 1.39291 * 120.92086 * 0.04753 * 13 12 11 15 15 C 1.36395 * 121.03742 * 359.97083 * 14 13 12 16 16 C 1.40207 * 119.78497 * 0.02562 * 15 14 13 17 17 C 1.41063 * 120.91210 * 179.97438 * 16 15 14 18 18 C 1.50707 * 119.89289 * 0.02562 * 17 16 15 19 19 F 1.39904 * 109.46934 * 60.00061 * 18 17 16 20 20 F 1.39898 * 109.47174 * 300.00032 * 18 17 16 21 21 C 1.35315 * 120.21521 * 180.28136 * 17 16 15 22 22 H 0.97007 * 120.00189 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.33140 * 0.02562 * 10 9 7 24 24 H 1.08004 * 120.18290 * 0.02562 * 12 11 10 25 25 H 1.08006 * 119.53516 * 180.02562 * 13 12 11 26 26 H 1.08006 * 119.48284 * 179.97438 * 14 13 12 27 27 H 1.07994 * 120.10757 * 180.02562 * 15 14 13 28 28 H 1.08995 * 109.47122 * 179.97438 * 18 17 16 29 29 H 1.08006 * 119.62348 * 179.74543 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6963 1.2126 7 6 2.0079 -1.2122 0.0005 8 1 3.0487 -1.2348 0.2881 9 6 1.3534 -2.4052 -0.3748 10 6 1.8240 -3.6370 0.0963 11 6 1.1670 -4.8126 -0.2832 12 6 1.6105 -6.0707 0.1694 13 6 0.9496 -7.1965 -0.2172 14 6 -0.1601 -7.1227 -1.0560 15 6 -0.6170 -5.9218 -1.5137 16 6 0.0360 -4.7392 -1.1384 17 6 -0.4159 -3.4846 -1.5982 18 6 -1.6168 -3.4051 -2.5053 19 9 -2.7295 -3.9490 -1.8545 20 9 -1.3642 -4.1253 -3.6777 21 6 0.2285 -2.3525 -1.2317 22 1 -0.4851 0.8401 -0.0004 23 1 2.6856 -3.6793 0.7462 24 1 2.4695 -6.1417 0.8201 25 1 1.2907 -8.1603 0.1311 26 1 -0.6666 -8.0306 -1.3485 27 1 -1.4790 -5.8820 -2.1631 28 1 -1.8156 -2.3628 -2.7544 29 1 -0.1233 -1.3973 -1.5927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380494458.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:50 Heat of formation + Delta-G solvation = -90.091699 kcal Electronic energy + Delta-G solvation = -17404.289186 eV Core-core repulsion = 14312.344714 eV Total energy + Delta-G solvation = -3091.944472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.96670 -47.90439 -40.70506 -37.63898 -35.28009 -33.71450 -31.22720 -30.64314 -27.44866 -26.58331 -23.75414 -23.24724 -21.88576 -19.66039 -18.62723 -18.14898 -17.74374 -17.59823 -17.05620 -16.45242 -16.01117 -14.95264 -14.91611 -14.77011 -14.36977 -14.31778 -14.10848 -13.72959 -13.66496 -13.30310 -13.00680 -12.82490 -12.54166 -12.33811 -12.03860 -11.85529 -11.53487 -11.20021 -11.07947 -10.54858 -9.28303 -8.91183 -8.62797 -6.41166 -0.12296 0.53005 1.31811 1.39300 1.45256 1.51905 2.14668 2.21098 2.87871 2.96135 3.32351 3.59396 3.75457 4.10973 4.20960 4.26670 4.36814 4.59783 4.70588 4.81656 4.88410 5.04912 5.10908 5.23090 5.40980 5.58802 5.64281 5.76825 5.85236 5.92604 6.20619 6.32930 6.40633 6.75422 6.79856 8.16400 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.008166 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.736182 B = 3428.073534 C = 4341.198758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.477 4.477 8 H 0.084 0.916 9 C 0.080 3.920 10 C -0.280 4.280 11 C -0.016 4.016 12 C -0.157 4.157 13 C -0.106 4.106 14 C -0.173 4.173 15 C -0.099 4.099 16 C -0.130 4.130 17 C -0.176 4.176 18 C 0.320 3.680 19 F -0.209 7.209 20 F -0.208 7.208 21 C -0.077 4.077 22 H 0.298 0.702 23 H 0.103 0.897 24 H 0.128 0.872 25 H 0.146 0.854 26 H 0.139 0.861 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -2.790 -2.711 4.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.505 4.505 8 H 0.102 0.898 9 C 0.078 3.922 10 C -0.300 4.300 11 C -0.016 4.016 12 C -0.175 4.175 13 C -0.124 4.124 14 C -0.191 4.191 15 C -0.117 4.117 16 C -0.131 4.131 17 C -0.178 4.178 18 C 0.266 3.734 19 F -0.190 7.190 20 F -0.189 7.189 21 C -0.096 4.096 22 H 0.109 0.891 23 H 0.121 0.879 24 H 0.146 0.854 25 H 0.163 0.837 26 H 0.156 0.844 27 H 0.132 0.868 28 H 0.158 0.842 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.275 -2.653 -2.713 4.003 hybrid contribution 0.221 0.681 0.156 0.733 sum -1.054 -1.972 -2.557 3.397 Atomic orbital electron populations 1.69778 1.09023 1.31729 1.33372 1.26836 0.95545 1.04678 0.90697 0.85161 0.78831 0.75096 0.80231 1.18238 1.18828 1.18468 1.19900 0.98771 0.91913 1.39936 0.89758 1.17878 0.91196 0.93649 0.89504 1.21108 1.06522 0.91880 1.10479 1.18124 0.93911 0.94399 0.95171 1.21163 1.01708 0.91662 1.02993 1.20995 0.95418 0.98605 0.97394 1.20865 0.99228 0.97436 1.01590 1.21068 0.98805 0.92610 0.99196 1.17742 0.98890 0.92893 1.03557 1.20162 0.99312 0.94728 1.03555 1.20543 0.81290 0.93918 0.77606 1.92939 1.55118 1.88686 1.82301 1.92940 1.94552 1.81591 1.49828 1.21149 0.95896 0.96622 0.95943 0.89130 0.87908 0.85382 0.83666 0.84352 0.86772 0.84231 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.35 10.97 21.83 0.24 -38.11 15 2 C 0.04 1.81 5.12 85.27 0.44 2.25 15 3 Si 0.99 34.59 29.60 68.60 2.03 36.62 15 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 5 H -0.26 -8.68 7.11 99.48 0.71 -7.98 15 6 H -0.26 -8.99 7.11 99.48 0.71 -8.29 15 7 C -0.48 -23.99 9.01 23.41 0.21 -23.78 15 8 H 0.08 4.09 7.91 -2.91 -0.02 4.07 15 9 C 0.08 4.17 5.56 -21.32 -0.12 4.05 15 10 C -0.28 -13.96 9.54 23.11 0.22 -13.74 15 11 C -0.02 -0.75 5.74 -21.30 -0.12 -0.87 15 12 C -0.16 -6.17 9.77 22.43 0.22 -5.95 15 13 C -0.11 -3.60 9.95 22.04 0.22 -3.38 15 14 C -0.17 -6.05 9.95 22.09 0.22 -5.83 15 15 C -0.10 -4.02 8.78 22.32 0.20 -3.83 15 16 C -0.13 -6.04 5.73 -21.18 -0.12 -6.16 15 17 C -0.18 -8.06 5.36 -19.84 -0.11 -8.17 15 18 C 0.32 12.11 4.92 71.24 0.35 12.46 15 19 F -0.21 -8.11 16.07 44.97 0.72 -7.38 15 20 F -0.21 -7.78 16.07 44.97 0.72 -7.06 15 21 C -0.08 -3.79 8.19 22.40 0.18 -3.60 15 22 H 0.30 12.49 8.30 -92.70 -0.77 11.72 15 23 H 0.10 4.88 8.06 -2.91 -0.02 4.86 15 24 H 0.13 4.43 8.06 -2.91 -0.02 4.40 15 25 H 0.15 3.70 8.06 -2.91 -0.02 3.68 15 26 H 0.14 3.83 8.06 -2.91 -0.02 3.81 15 27 H 0.11 4.43 5.82 -2.91 -0.02 4.41 15 28 H 0.14 4.45 7.82 -2.39 -0.02 4.43 15 29 H 0.13 6.08 5.98 -2.91 -0.02 6.07 15 Total: -1.00 -56.17 259.71 6.68 -49.48 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 1.18 Total: 22.99 kcal Atomic # 6 Polarization: -58.32 SS G_CDS: 1.79 Total: -56.53 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.24 Total: -38.11 kcal Atomic # 9 Polarization: -15.89 SS G_CDS: 1.45 Total: -14.45 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -56.17 6.68 -49.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380494458.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.611 kcal (2) G-P(sol) polarization free energy of solvation -56.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds