Wall clock time and date at job start Mon Mar 30 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48492 * 109.47362 * 240.00406 * 3 2 1 5 5 H 1.48503 * 109.46939 * 120.00074 * 3 2 1 6 6 H 1.48494 * 109.47041 * 0.02562 * 3 2 1 7 7 C 1.40162 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00111 * 171.26940 * 7 2 1 9 9 C 1.40445 * 119.99747 * 351.25973 * 7 2 1 10 10 C 1.40529 * 120.72045 * 306.26087 * 9 7 2 11 11 C 1.38155 * 120.42550 * 179.97438 * 10 9 7 12 12 C 1.37670 * 121.79522 * 0.02562 * 11 10 9 13 13 C 1.40642 * 120.79412 * 359.97438 * 12 11 10 14 14 C 1.40514 * 121.16501 * 179.97438 * 13 12 11 15 15 C 1.36328 * 119.77098 * 180.02562 * 14 13 12 16 16 C 1.39085 * 120.93445 * 0.02562 * 15 14 13 17 17 C 1.37687 * 120.71222 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.22136 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47142 * 358.38213 * 18 17 16 20 20 F 1.39897 * 109.47205 * 118.38782 * 18 17 16 21 21 C 1.39542 * 119.55732 * 359.70845 * 17 16 15 22 22 H 0.96997 * 120.00411 * 184.08200 * 1 2 3 23 23 H 1.08005 * 119.78462 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.10252 * 180.02562 * 11 10 9 25 25 H 1.08001 * 119.59874 * 180.02562 * 12 11 10 26 26 H 1.08006 * 120.11212 * 0.03738 * 14 13 12 27 27 H 1.08006 * 119.53470 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.64622 * 179.97438 * 16 15 14 29 29 H 1.09001 * 109.46888 * 238.38592 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 3.0952 1.6963 1.2125 6 1 1.2765 2.7464 0.0006 7 6 2.0082 -1.2138 -0.0005 8 1 3.0787 -1.2192 -0.1425 9 6 1.3181 -2.4231 0.1837 10 6 0.4784 -2.6083 1.2952 11 6 -0.1980 -3.8002 1.4702 12 6 -0.0782 -4.8402 0.5762 13 6 0.7450 -4.7234 -0.5581 14 6 0.8734 -5.7801 -1.4754 15 6 1.6797 -5.6363 -2.5652 16 6 2.3811 -4.4555 -2.7848 17 6 2.2768 -3.4016 -1.9049 18 6 3.0413 -2.1271 -2.1540 19 9 3.8118 -2.2644 -3.3136 20 9 2.1419 -1.0676 -2.3144 21 6 1.4533 -3.5192 -0.7846 22 1 -0.4850 -0.8378 0.0598 23 1 0.3610 -1.8137 2.0173 24 1 -0.8381 -3.9193 2.3319 25 1 -0.6237 -5.7565 0.7475 26 1 0.3349 -6.7030 -1.3176 27 1 1.7759 -6.4511 -3.2676 28 1 3.0144 -4.3643 -3.6549 29 1 3.6947 -1.9237 -1.3056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380590987.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:18 Heat of formation + Delta-G solvation = -73.007055 kcal Electronic energy + Delta-G solvation = -18030.800160 eV Core-core repulsion = 14939.596534 eV Total energy + Delta-G solvation = -3091.203626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79322 -47.74050 -40.75397 -37.36647 -35.65136 -33.47243 -31.01028 -30.26194 -27.72170 -26.35523 -23.59357 -23.53476 -21.92194 -19.88483 -18.43174 -18.16739 -17.90573 -17.68287 -16.65003 -16.22440 -15.69221 -15.33196 -15.05684 -14.68955 -14.36471 -14.21788 -14.06732 -13.83684 -13.62280 -13.29658 -12.91518 -12.58620 -12.50391 -12.04935 -11.86638 -11.68907 -11.38833 -11.14166 -10.88622 -10.40463 -9.42776 -9.09622 -8.49468 -6.41946 -0.25215 0.35474 1.19129 1.50563 1.60544 1.74349 2.23329 2.37958 2.91068 2.95775 3.39799 3.45621 3.86349 4.08503 4.15903 4.24575 4.34031 4.47470 4.56197 4.65477 4.80361 4.88039 5.17423 5.36164 5.38115 5.49594 5.59366 5.69351 5.81404 5.91918 6.02051 6.18420 6.32747 6.64534 6.94278 8.24543 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.012191 C = 0.008183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.368284 B = 2296.302339 C = 3420.889572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.016 3.984 3 Si 1.102 2.898 4 H -0.261 1.261 5 H -0.255 1.255 6 H -0.277 1.277 7 C -0.550 4.550 8 H 0.087 0.913 9 C 0.088 3.912 10 C -0.250 4.250 11 C -0.070 4.070 12 C -0.231 4.231 13 C -0.038 4.038 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.132 4.132 17 C -0.142 4.142 18 C 0.313 3.687 19 F -0.214 7.214 20 F -0.193 7.193 21 C -0.107 4.107 22 H 0.278 0.722 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.134 0.866 26 H 0.151 0.849 27 H 0.159 0.841 28 H 0.139 0.861 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -6.422 -2.634 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.197 4.197 3 Si 0.920 3.080 4 H -0.186 1.186 5 H -0.179 1.179 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.104 0.896 9 C 0.086 3.914 10 C -0.270 4.270 11 C -0.088 4.088 12 C -0.250 4.250 13 C -0.038 4.038 14 C -0.139 4.139 15 C -0.131 4.131 16 C -0.151 4.151 17 C -0.143 4.143 18 C 0.260 3.740 19 F -0.196 7.196 20 F -0.174 7.174 21 C -0.107 4.107 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.139 0.861 25 H 0.152 0.848 26 H 0.168 0.832 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.040 -4.742 -2.726 6.800 hybrid contribution -0.211 -1.358 0.208 1.390 sum 3.829 -6.100 -2.518 7.630 Atomic orbital electron populations 1.70507 1.08797 1.32784 1.35115 1.27965 0.95677 1.06119 0.89955 0.83204 0.75044 0.70642 0.79103 1.18557 1.17926 1.20227 1.20524 0.96754 0.92250 1.48393 0.89568 1.18974 0.91732 0.91600 0.89098 1.21146 1.08717 0.98122 0.99029 1.20888 0.96580 0.92947 0.98366 1.20898 1.06224 1.00450 0.97411 1.18263 0.96372 0.93075 0.96102 1.21382 0.99835 0.98491 0.94198 1.21048 0.96417 0.97522 0.98119 1.21132 1.01497 0.93298 0.99125 1.20429 1.00371 0.96037 0.97430 1.20512 0.85244 0.83516 0.84716 1.92878 1.76095 1.96159 1.54442 1.93028 1.69836 1.58600 1.95929 1.19483 1.00028 0.96243 0.94979 0.91025 0.89679 0.86116 0.84822 0.83150 0.82391 0.84278 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.19 13.44 21.87 0.29 -46.90 15 2 C 0.02 0.82 4.39 85.32 0.37 1.19 15 3 Si 1.10 44.29 29.91 68.60 2.05 46.35 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 6 H -0.28 -11.24 7.11 99.48 0.71 -10.54 15 7 C -0.55 -27.88 5.07 23.28 0.12 -27.76 15 8 H 0.09 4.11 5.20 -2.91 -0.02 4.09 15 9 C 0.09 4.53 4.96 -19.92 -0.10 4.43 15 10 C -0.25 -12.37 7.97 22.81 0.18 -12.19 15 11 C -0.07 -2.97 9.92 22.12 0.22 -2.75 15 12 C -0.23 -9.19 9.77 22.72 0.22 -8.97 15 13 C -0.04 -1.59 5.74 -21.33 -0.12 -1.72 15 14 C -0.12 -4.03 9.77 22.38 0.22 -3.81 15 15 C -0.11 -3.48 9.95 22.03 0.22 -3.26 15 16 C -0.13 -4.71 9.42 22.34 0.21 -4.50 15 17 C -0.14 -6.08 5.64 -19.68 -0.11 -6.19 15 18 C 0.31 13.16 4.35 71.23 0.31 13.47 15 19 F -0.21 -8.12 16.00 44.97 0.72 -7.40 15 20 F -0.19 -9.39 13.74 44.97 0.62 -8.78 15 21 C -0.11 -5.04 5.89 -19.89 -0.12 -5.15 15 22 H 0.28 16.11 6.37 -92.71 -0.59 15.52 15 23 H 0.08 4.37 8.06 -2.91 -0.02 4.35 15 24 H 0.12 4.36 8.06 -2.91 -0.02 4.34 15 25 H 0.13 4.33 8.06 -2.91 -0.02 4.30 15 26 H 0.15 3.87 8.06 -2.91 -0.02 3.85 15 27 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15 28 H 0.14 4.31 7.14 -2.91 -0.02 4.29 15 29 H 0.13 5.14 5.64 -2.39 -0.01 5.12 15 Total: -1.00 -59.64 251.88 6.67 -52.97 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 1.36 Total: 20.98 kcal Atomic # 6 Polarization: -58.84 SS G_CDS: 1.62 Total: -57.21 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.29 Total: -46.90 kcal Atomic # 9 Polarization: -17.52 SS G_CDS: 1.34 Total: -16.18 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.05 Total: 46.35 kcal Total: -59.64 6.67 -52.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380590987.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.040 kcal (2) G-P(sol) polarization free energy of solvation -59.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds