Wall clock time and date at job start Mon Mar 30 2020 05:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48497 * 109.46993 * 275.37753 * 3 2 1 5 5 H 1.48506 * 109.47115 * 35.37690 * 3 2 1 6 6 H 1.48501 * 109.47328 * 155.37243 * 3 2 1 7 7 C 1.40162 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00529 * 342.06205 * 7 2 1 9 9 C 1.40450 * 119.99448 * 162.06039 * 7 2 1 10 10 C 1.40527 * 120.71887 * 329.90590 * 9 7 2 11 11 C 1.38162 * 120.42060 * 180.02562 * 10 9 7 12 12 C 1.37664 * 121.79460 * 359.94191 * 11 10 9 13 13 C 1.40648 * 120.79950 * 0.03865 * 12 11 10 14 14 C 1.40513 * 121.16873 * 179.97438 * 13 12 11 15 15 C 1.36328 * 119.76822 * 180.02562 * 14 13 12 16 16 C 1.39080 * 120.93409 * 359.96380 * 15 14 13 17 17 C 1.50701 * 119.64265 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47264 * 119.97681 * 17 16 15 19 19 F 1.39904 * 109.46757 * 239.97541 * 17 16 15 20 20 C 1.37685 * 120.71505 * 0.02562 * 16 15 14 21 21 C 1.39531 * 119.55555 * 0.02562 * 20 16 15 22 22 H 0.96996 * 120.00125 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.78950 * 0.04669 * 10 9 7 24 24 H 1.07996 * 119.09623 * 179.97438 * 11 10 9 25 25 H 1.08007 * 119.59939 * 180.31942 * 12 11 10 26 26 H 1.07998 * 120.11490 * 0.02562 * 14 13 12 27 27 H 1.08005 * 119.53466 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.47312 * 359.96941 * 17 16 15 29 29 H 1.08000 * 120.22428 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3752 2.1119 -1.3939 5 1 1.5002 2.6172 0.8106 6 1 3.5911 1.4101 0.5834 7 6 2.0081 -1.2139 0.0005 8 1 1.5076 -2.1263 0.2890 9 6 3.3614 -1.2435 -0.3741 10 6 3.8694 -0.3197 -1.3033 11 6 5.2016 -0.3548 -1.6678 12 6 6.0732 -1.2819 -1.1425 13 6 5.6326 -2.2356 -0.2073 14 6 6.5153 -3.1857 0.3334 15 6 6.0575 -4.0976 1.2376 16 6 4.7249 -4.1024 1.6359 17 6 4.2501 -5.1232 2.6377 18 9 3.7469 -4.4691 3.7672 19 9 3.2421 -5.9056 2.0641 20 6 3.8348 -3.1846 1.1248 21 6 4.2763 -2.2406 0.1970 22 1 -0.4850 0.8400 0.0004 23 1 3.2144 0.4226 -1.7349 24 1 5.5692 0.3650 -2.3841 25 1 7.1089 -1.2739 -1.4487 26 1 7.5529 -3.1936 0.0339 27 1 6.7392 -4.8264 1.6505 28 1 5.0842 -5.7617 2.9289 29 1 2.8019 -3.1953 1.4400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380748746.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:21 Heat of formation + Delta-G solvation = -80.469512 kcal Electronic energy + Delta-G solvation = -17210.458181 eV Core-core repulsion = 14118.930958 eV Total energy + Delta-G solvation = -3091.527223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.51047 -46.50622 -39.06146 -35.76853 -33.98961 -31.84526 -30.20689 -29.05119 -26.09617 -24.65172 -22.43487 -21.30047 -20.54964 -17.88480 -17.16739 -16.73960 -16.72244 -16.12703 -15.60495 -14.69633 -14.28489 -13.47098 -13.37517 -13.31084 -13.01906 -12.90606 -12.58519 -12.48474 -12.12534 -11.95021 -11.52595 -11.32535 -10.97385 -10.71658 -10.47796 -10.06547 -9.92053 -9.72072 -9.38501 -8.79235 -7.76227 -7.37161 -7.12864 -4.74625 1.48409 1.91451 2.77311 2.97285 3.08762 3.19713 3.70787 3.80801 4.23689 4.41604 4.67394 5.06815 5.22589 5.49555 5.56318 5.60563 5.90978 6.02605 6.13959 6.27525 6.46455 6.52328 6.61146 6.76824 7.01491 7.10460 7.12486 7.26629 7.53743 7.62147 7.76187 7.84438 8.00534 8.32732 8.40284 9.60143 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.008878 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.885484 B = 3153.246361 C = 4126.548221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.080 3.920 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.397 4.397 8 H 0.101 0.899 9 C 0.108 3.892 10 C -0.299 4.299 11 C -0.024 4.024 12 C -0.286 4.286 13 C 0.030 3.970 14 C -0.160 4.160 15 C -0.078 4.078 16 C -0.251 4.251 17 C 0.320 3.680 18 F -0.208 7.208 19 F -0.208 7.208 20 C -0.012 4.012 21 C -0.118 4.118 22 H 0.295 0.705 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 -3.295 2.286 7.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.145 4.145 3 Si 0.749 3.251 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.162 1.162 7 C -0.422 4.422 8 H 0.119 0.881 9 C 0.104 3.896 10 C -0.319 4.319 11 C -0.042 4.042 12 C -0.305 4.305 13 C 0.030 3.970 14 C -0.178 4.178 15 C -0.096 4.096 16 C -0.252 4.252 17 C 0.267 3.733 18 F -0.189 7.189 19 F -0.190 7.190 20 C -0.030 4.030 21 C -0.118 4.118 22 H 0.106 0.894 23 H 0.119 0.881 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.360 -3.220 2.326 7.499 hybrid contribution 0.046 0.706 -0.057 0.710 sum 6.406 -2.515 2.269 7.247 Atomic orbital electron populations 1.69626 1.08469 1.31607 1.29448 1.26463 0.94922 1.02652 0.90471 0.86050 0.81401 0.78290 0.79370 1.19068 1.21489 1.16154 1.19683 0.92886 0.96460 1.33178 0.88084 1.18658 0.91785 0.89943 0.89234 1.20673 0.95970 1.07618 1.07600 1.20462 0.93255 0.95095 0.95398 1.20252 0.98587 1.03234 1.08438 1.17885 0.92018 0.93455 0.93629 1.20697 0.98761 0.97844 1.00548 1.20207 0.93564 0.98396 0.97417 1.19806 0.95965 1.02911 1.06542 1.20267 0.85679 0.87205 0.80149 1.92977 1.89517 1.83008 1.53419 1.92978 1.64772 1.75773 1.85432 1.20930 0.98561 0.90971 0.92588 1.19013 0.92933 0.99677 1.00182 0.89377 0.88101 0.88914 0.88456 0.86797 0.87238 0.87687 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.84 13.92 55.56 0.77 -18.07 15 2 C 0.08 1.93 5.41 -17.30 -0.09 1.84 15 3 Si 0.92 19.68 24.53 -169.99 -4.17 15.51 15 4 H -0.26 -5.46 6.72 56.52 0.38 -5.08 15 5 H -0.29 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.24 -5.32 6.86 56.52 0.39 -4.94 15 7 C -0.40 -10.05 8.92 -38.03 -0.34 -10.39 15 8 H 0.10 2.65 7.06 -52.49 -0.37 2.28 15 9 C 0.11 2.65 5.25 -104.71 -0.55 2.10 15 10 C -0.30 -7.01 7.18 -38.75 -0.28 -7.29 15 11 C -0.02 -0.50 9.92 -39.82 -0.39 -0.90 15 12 C -0.29 -5.99 9.77 -38.88 -0.38 -6.37 15 13 C 0.03 0.66 5.74 -106.88 -0.61 0.04 15 14 C -0.16 -2.96 9.77 -39.41 -0.38 -3.35 15 15 C -0.08 -1.32 9.57 -39.96 -0.38 -1.71 15 16 C -0.25 -4.72 5.38 -104.51 -0.56 -5.28 15 17 C 0.32 5.17 5.44 36.01 0.20 5.36 15 18 F -0.21 -3.67 17.25 2.25 0.04 -3.63 15 19 F -0.21 -3.67 17.25 2.25 0.04 -3.63 15 20 C -0.01 -0.26 8.97 -39.30 -0.35 -0.62 15 21 C -0.12 -2.76 5.90 -104.66 -0.62 -3.37 15 22 H 0.30 6.44 8.29 -40.82 -0.34 6.10 15 23 H 0.10 2.31 4.76 -52.49 -0.25 2.06 15 24 H 0.09 1.70 8.06 -52.49 -0.42 1.28 15 25 H 0.10 1.79 8.06 -52.48 -0.42 1.37 15 26 H 0.11 1.79 8.06 -52.49 -0.42 1.37 15 27 H 0.11 1.44 7.92 -52.48 -0.42 1.02 15 28 H 0.11 1.25 7.85 -51.93 -0.41 0.84 15 29 H 0.12 2.76 6.75 -52.49 -0.35 2.40 15 LS Contribution 257.66 15.07 3.88 3.88 Total: -1.00 -26.19 257.66 -6.43 -32.62 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -2.24 Total: 3.25 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -4.75 Total: -29.93 kcal Atomic # 7 Polarization: -18.84 SS G_CDS: 0.77 Total: -18.07 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.08 Total: -7.26 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.17 Total: 15.51 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.19 -6.43 -32.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380748746.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.851 kcal (2) G-P(sol) polarization free energy of solvation -26.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds