Wall clock time and date at job start Mon Mar 30 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00260 * 2 1 4 4 H 1.48498 * 109.46956 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46861 * 240.00483 * 3 2 1 6 6 H 1.48495 * 109.46975 * 120.00293 * 3 2 1 7 7 C 1.40159 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99296 * 154.93393 * 7 2 1 9 9 C 1.40445 * 120.00064 * 334.93096 * 7 2 1 10 10 C 1.40523 * 120.71566 * 333.68803 * 9 7 2 11 11 C 1.38154 * 120.42342 * 179.97438 * 10 9 7 12 12 C 1.37673 * 121.79776 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.60686 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.47413 * 119.99878 * 13 12 11 15 15 F 1.39904 * 109.47263 * 239.99960 * 13 12 11 16 16 C 1.40651 * 120.79036 * 0.02632 * 12 11 10 17 17 C 1.40514 * 121.16337 * 179.97438 * 16 12 11 18 18 C 1.36338 * 119.76710 * 180.02562 * 17 16 12 19 19 C 1.39080 * 120.93438 * 0.02562 * 18 17 16 20 20 C 1.37688 * 120.71186 * 359.97438 * 19 18 17 21 21 C 1.39535 * 119.55967 * 359.66064 * 20 19 18 22 22 H 0.96992 * 120.00719 * 174.52297 * 1 2 3 23 23 H 1.08000 * 119.79546 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.10576 * 180.02562 * 11 10 9 25 25 H 1.09000 * 109.47017 * 359.97438 * 13 12 11 26 26 H 1.08002 * 120.11216 * 0.03421 * 17 16 12 27 27 H 1.07994 * 119.53270 * 179.97438 * 18 17 16 28 28 H 1.07997 * 119.64161 * 179.97438 * 19 18 17 29 29 H 1.07998 * 120.22126 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0951 1.6963 -1.2126 6 1 3.0952 1.6963 1.2124 7 6 2.0081 -1.2139 -0.0005 8 1 3.0117 -1.2577 -0.3968 9 6 1.4050 -2.3731 0.5143 10 6 0.3996 -2.2853 1.4922 11 6 -0.1899 -3.4295 1.9941 12 6 0.1785 -4.6842 1.5633 13 6 -0.4971 -5.8992 2.1449 14 9 -1.1288 -6.6157 1.1228 15 9 0.4584 -6.7130 2.7631 16 6 1.1786 -4.8456 0.5876 17 6 1.5610 -6.1224 0.1426 18 6 2.5342 -6.2459 -0.8041 19 6 3.1580 -5.1237 -1.3388 20 6 2.8060 -3.8588 -0.9240 21 6 1.8076 -3.7029 0.0383 22 1 -0.4851 -0.8361 -0.0802 23 1 0.0852 -1.3173 1.8532 24 1 -0.9608 -3.3374 2.7448 25 1 -1.2377 -5.5858 2.8807 26 1 1.0855 -7.0028 0.5492 27 1 2.8255 -7.2290 -1.1430 28 1 3.9267 -5.2457 -2.0875 29 1 3.2952 -2.9929 -1.3448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390058651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:53 Heat of formation + Delta-G solvation = -88.338998 kcal Electronic energy + Delta-G solvation = -17437.818409 eV Core-core repulsion = 14345.949940 eV Total energy + Delta-G solvation = -3091.868469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.22538 -46.17545 -38.93470 -35.83776 -34.23173 -31.51360 -29.25105 -28.61510 -26.84960 -23.73698 -22.27119 -21.74159 -20.39638 -18.14560 -16.84134 -16.67213 -16.42410 -15.94057 -15.18837 -14.50782 -14.26002 -13.63674 -13.20283 -13.17249 -12.73925 -12.60755 -12.43700 -12.19230 -11.99952 -11.71529 -11.53377 -11.26317 -10.76263 -10.65091 -10.32645 -10.21709 -9.81758 -9.57461 -9.35456 -8.71553 -7.83637 -7.57816 -7.13349 -4.82031 1.63162 2.18584 2.79243 2.94201 3.11186 3.15163 3.68116 3.89202 4.44114 4.58380 5.15900 5.22654 5.47265 5.69165 5.77465 5.87761 5.95468 5.97615 6.22225 6.39885 6.53726 6.65625 6.93314 6.99825 7.09498 7.22409 7.34393 7.36376 7.47188 7.57733 7.74880 7.83247 8.03734 8.29413 8.40968 9.52491 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.007804 C = 0.006436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.810236 B = 3586.879106 C = 4349.632363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.031 3.969 3 Si 1.069 2.931 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.453 4.453 8 H 0.091 0.909 9 C 0.115 3.885 10 C -0.291 4.291 11 C 0.003 3.997 12 C -0.355 4.355 13 C 0.331 3.669 14 F -0.216 7.216 15 F -0.217 7.217 16 C 0.048 3.952 17 C -0.160 4.160 18 C -0.103 4.103 19 C -0.191 4.191 20 C -0.066 4.066 21 C -0.118 4.118 22 H 0.310 0.690 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -2.273 0.727 2.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.196 4.196 3 Si 0.890 3.110 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.478 4.478 8 H 0.109 0.891 9 C 0.110 3.890 10 C -0.311 4.311 11 C -0.016 4.016 12 C -0.357 4.357 13 C 0.278 3.722 14 F -0.198 7.198 15 F -0.198 7.198 16 C 0.048 3.952 17 C -0.178 4.178 18 C -0.121 4.121 19 C -0.210 4.210 20 C -0.085 4.085 21 C -0.118 4.118 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.113 -0.669 0.764 1.507 hybrid contribution 0.092 -1.934 -0.037 1.937 sum 1.205 -2.604 0.727 2.960 Atomic orbital electron populations 1.70390 1.08341 1.35562 1.22836 1.27454 0.95632 1.04941 0.91574 0.83558 0.75774 0.72995 0.78625 1.19262 1.19493 1.19363 1.20913 1.02664 0.93708 1.30512 0.89105 1.18729 0.90430 0.90589 0.89205 1.20702 1.07961 0.96759 1.05636 1.20156 0.94873 0.91713 0.94865 1.19141 1.10985 0.92685 1.12872 1.20043 0.85133 0.83077 0.83989 1.92923 1.82854 1.80928 1.63077 1.92923 1.67459 1.76107 1.83315 1.17395 0.92880 0.92135 0.92789 1.20902 1.00299 0.96338 1.00241 1.20546 0.96833 0.97581 0.97185 1.20721 1.03549 0.92726 1.03969 1.21036 0.95247 0.96536 0.95645 1.19086 1.00180 0.92769 0.99813 0.87565 0.87392 0.88922 0.88754 0.87124 0.87807 0.87676 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.83 12.36 55.56 0.69 -17.15 15 2 C 0.03 0.70 4.95 -17.30 -0.09 0.61 15 3 Si 1.07 18.74 30.00 -169.99 -5.10 13.64 15 4 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 5 H -0.27 -4.46 7.11 56.52 0.40 -4.06 15 6 H -0.27 -4.58 7.11 56.52 0.40 -4.17 15 7 C -0.45 -10.68 8.41 -38.03 -0.32 -11.00 15 8 H 0.09 2.02 6.81 -52.49 -0.36 1.66 15 9 C 0.11 2.83 5.44 -104.71 -0.57 2.26 15 10 C -0.29 -6.98 7.95 -38.75 -0.31 -7.29 15 11 C 0.00 0.06 9.54 -39.82 -0.38 -0.32 15 12 C -0.35 -7.98 5.42 -103.92 -0.56 -8.55 15 13 C 0.33 6.42 4.92 36.00 0.18 6.60 15 14 F -0.22 -4.36 16.05 2.25 0.04 -4.32 15 15 F -0.22 -4.33 16.05 2.25 0.04 -4.30 15 16 C 0.05 1.14 5.71 -106.87 -0.61 0.53 15 17 C -0.16 -3.48 8.77 -39.41 -0.35 -3.83 15 18 C -0.10 -2.04 9.95 -39.95 -0.40 -2.43 15 19 C -0.19 -3.75 10.02 -39.47 -0.40 -4.15 15 20 C -0.07 -1.44 9.46 -39.30 -0.37 -1.82 15 21 C -0.12 -2.86 5.90 -104.66 -0.62 -3.48 15 22 H 0.31 7.63 6.68 -40.82 -0.27 7.36 15 23 H 0.11 2.60 6.54 -52.49 -0.34 2.26 15 24 H 0.09 1.74 7.87 -52.49 -0.41 1.33 15 25 H 0.10 1.50 7.82 -51.93 -0.41 1.10 15 26 H 0.11 2.33 5.82 -52.49 -0.31 2.03 15 27 H 0.10 1.72 8.06 -52.49 -0.42 1.29 15 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 15 29 H 0.12 2.36 6.67 -52.49 -0.35 2.01 15 LS Contribution 256.55 15.07 3.87 3.87 Total: -1.00 -25.95 256.55 -7.35 -33.30 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.09 Total: 7.81 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: -4.79 Total: -32.85 kcal Atomic # 7 Polarization: -17.83 SS G_CDS: 0.69 Total: -17.15 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.10 Total: 13.64 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -25.95 -7.35 -33.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390058651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.040 kcal (2) G-P(sol) polarization free energy of solvation -25.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds