Wall clock time and date at job start Mon Mar 30 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00260 * 2 1 4 4 H 1.48498 * 109.46956 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46861 * 240.00483 * 3 2 1 6 6 H 1.48495 * 109.46975 * 120.00293 * 3 2 1 7 7 C 1.40159 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99296 * 154.93393 * 7 2 1 9 9 C 1.40445 * 120.00064 * 334.93096 * 7 2 1 10 10 C 1.40523 * 120.71566 * 333.68803 * 9 7 2 11 11 C 1.38154 * 120.42342 * 179.97438 * 10 9 7 12 12 C 1.37673 * 121.79776 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.60686 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.47413 * 119.99878 * 13 12 11 15 15 F 1.39904 * 109.47263 * 239.99960 * 13 12 11 16 16 C 1.40651 * 120.79036 * 0.02632 * 12 11 10 17 17 C 1.40514 * 121.16337 * 179.97438 * 16 12 11 18 18 C 1.36338 * 119.76710 * 180.02562 * 17 16 12 19 19 C 1.39080 * 120.93438 * 0.02562 * 18 17 16 20 20 C 1.37688 * 120.71186 * 359.97438 * 19 18 17 21 21 C 1.39535 * 119.55967 * 359.66064 * 20 19 18 22 22 H 0.96992 * 120.00719 * 174.52297 * 1 2 3 23 23 H 1.08000 * 119.79546 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.10576 * 180.02562 * 11 10 9 25 25 H 1.09000 * 109.47017 * 359.97438 * 13 12 11 26 26 H 1.08002 * 120.11216 * 0.03421 * 17 16 12 27 27 H 1.07994 * 119.53270 * 179.97438 * 18 17 16 28 28 H 1.07997 * 119.64161 * 179.97438 * 19 18 17 29 29 H 1.07998 * 120.22126 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0951 1.6963 -1.2126 6 1 3.0952 1.6963 1.2124 7 6 2.0081 -1.2139 -0.0005 8 1 3.0117 -1.2577 -0.3968 9 6 1.4050 -2.3731 0.5143 10 6 0.3996 -2.2853 1.4922 11 6 -0.1899 -3.4295 1.9941 12 6 0.1785 -4.6842 1.5633 13 6 -0.4971 -5.8992 2.1449 14 9 -1.1288 -6.6157 1.1228 15 9 0.4584 -6.7130 2.7631 16 6 1.1786 -4.8456 0.5876 17 6 1.5610 -6.1224 0.1426 18 6 2.5342 -6.2459 -0.8041 19 6 3.1580 -5.1237 -1.3388 20 6 2.8060 -3.8588 -0.9240 21 6 1.8076 -3.7029 0.0383 22 1 -0.4851 -0.8361 -0.0802 23 1 0.0852 -1.3173 1.8532 24 1 -0.9608 -3.3374 2.7448 25 1 -1.2377 -5.5858 2.8807 26 1 1.0855 -7.0028 0.5492 27 1 2.8255 -7.2290 -1.1430 28 1 3.9267 -5.2457 -2.0875 29 1 3.2952 -2.9929 -1.3448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390058651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:52 Heat of formation + Delta-G solvation = -99.421740 kcal Electronic energy + Delta-G solvation = -17438.298993 eV Core-core repulsion = 14345.949940 eV Total energy + Delta-G solvation = -3092.349053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79167 -47.74524 -40.62748 -37.52837 -35.92525 -33.21793 -30.94141 -30.28884 -28.54200 -25.39726 -23.93969 -23.44222 -22.08639 -19.83675 -18.44877 -18.32519 -17.99267 -17.56511 -16.80910 -16.17615 -15.75349 -15.26789 -14.84227 -14.78167 -14.45762 -14.18150 -14.11789 -13.86447 -13.67902 -13.30070 -13.11786 -12.75986 -12.37886 -12.04272 -11.93563 -11.82528 -11.50855 -11.19620 -11.02867 -10.45119 -9.59021 -9.30820 -8.85807 -6.61533 -0.07782 0.47601 1.16169 1.50194 1.61869 1.79713 2.19798 2.25846 2.74761 3.09519 3.48363 3.59151 3.91043 4.12090 4.15239 4.28175 4.32259 4.39066 4.61913 4.73710 4.86690 4.91884 5.18774 5.29946 5.39353 5.47865 5.60361 5.66688 5.75406 5.88217 6.00686 6.08756 6.34206 6.54559 6.65545 7.73438 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.007804 C = 0.006436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.810236 B = 3586.879106 C = 4349.632363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.003 3.997 3 Si 1.119 2.881 4 H -0.269 1.269 5 H -0.250 1.250 6 H -0.260 1.260 7 C -0.479 4.479 8 H 0.096 0.904 9 C 0.091 3.909 10 C -0.314 4.314 11 C -0.003 4.003 12 C -0.364 4.364 13 C 0.332 3.668 14 F -0.221 7.221 15 F -0.220 7.220 16 C 0.016 3.984 17 C -0.172 4.172 18 C -0.099 4.099 19 C -0.178 4.178 20 C -0.084 4.084 21 C -0.148 4.148 22 H 0.294 0.706 23 H 0.097 0.903 24 H 0.124 0.876 25 H 0.137 0.863 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -3.088 0.397 3.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.219 4.219 3 Si 0.934 3.066 4 H -0.193 1.193 5 H -0.174 1.174 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.114 0.886 9 C 0.087 3.913 10 C -0.334 4.334 11 C -0.021 4.021 12 C -0.366 4.366 13 C 0.279 3.721 14 F -0.202 7.202 15 F -0.201 7.201 16 C 0.016 3.984 17 C -0.190 4.190 18 C -0.117 4.117 19 C -0.196 4.196 20 C -0.102 4.102 21 C -0.149 4.149 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.142 0.858 25 H 0.155 0.845 26 H 0.133 0.867 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.026 -1.515 0.432 2.567 hybrid contribution -0.160 -1.879 0.031 1.886 sum 1.866 -3.395 0.463 3.901 Atomic orbital electron populations 1.70493 1.09141 1.34435 1.25214 1.28818 0.95540 1.07736 0.89766 0.82973 0.74862 0.69047 0.79674 1.19326 1.17415 1.18472 1.21115 1.03119 0.94303 1.31842 0.88594 1.19087 0.90981 0.91528 0.89695 1.20743 1.09064 0.97010 1.06543 1.20457 0.95246 0.91166 0.95244 1.19612 1.10568 0.94076 1.12313 1.20254 0.85566 0.81788 0.84466 1.92910 1.82792 1.80903 1.63616 1.92911 1.67911 1.76072 1.83235 1.17805 0.93861 0.92938 0.93820 1.21088 1.01180 0.95659 1.01077 1.21013 0.95420 0.99512 0.95785 1.21170 1.03282 0.91632 1.03495 1.21265 0.95232 0.98069 0.95646 1.19434 1.01519 0.92864 1.01074 0.89329 0.88540 0.85820 0.84549 0.86667 0.83916 0.83843 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.92 12.36 21.87 0.27 -37.65 15 2 C 0.00 0.14 4.95 85.32 0.42 0.56 15 3 Si 1.12 37.51 30.00 68.60 2.06 39.57 15 4 H -0.27 -8.96 7.11 99.48 0.71 -8.25 15 5 H -0.25 -7.55 7.11 99.48 0.71 -6.84 15 6 H -0.26 -8.31 7.11 99.48 0.71 -7.60 15 7 C -0.48 -23.18 8.41 23.27 0.20 -22.98 15 8 H 0.10 4.36 6.81 -2.91 -0.02 4.34 15 9 C 0.09 4.64 5.44 -19.92 -0.11 4.53 15 10 C -0.31 -15.56 7.95 22.81 0.18 -15.38 15 11 C 0.00 -0.11 9.54 22.12 0.21 0.10 15 12 C -0.36 -16.19 5.42 -19.41 -0.11 -16.30 15 13 C 0.33 12.28 4.92 71.23 0.35 12.63 15 14 F -0.22 -8.53 16.05 44.97 0.72 -7.80 15 15 F -0.22 -8.41 16.05 44.97 0.72 -7.69 15 16 C 0.02 0.75 5.71 -21.32 -0.12 0.63 15 17 C -0.17 -7.24 8.77 22.38 0.20 -7.04 15 18 C -0.10 -3.62 9.95 22.03 0.22 -3.40 15 19 C -0.18 -6.48 10.02 22.34 0.22 -6.26 15 20 C -0.08 -3.60 9.46 22.45 0.21 -3.39 15 21 C -0.15 -7.28 5.90 -19.89 -0.12 -7.40 15 22 H 0.29 15.21 6.68 -92.71 -0.62 14.59 15 23 H 0.10 4.88 6.54 -2.91 -0.02 4.86 15 24 H 0.12 4.52 7.87 -2.91 -0.02 4.50 15 25 H 0.14 3.93 7.82 -2.39 -0.02 3.91 15 26 H 0.12 4.66 5.82 -2.91 -0.02 4.65 15 27 H 0.14 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.14 4.10 8.06 -2.91 -0.02 4.08 15 29 H 0.12 4.97 6.67 -2.91 -0.02 4.95 15 Total: -1.00 -56.94 256.55 6.87 -50.07 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 1.34 Total: 27.20 kcal Atomic # 6 Polarization: -65.47 SS G_CDS: 1.76 Total: -63.71 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.27 Total: -37.65 kcal Atomic # 9 Polarization: -16.93 SS G_CDS: 1.44 Total: -15.49 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.06 Total: 39.57 kcal Total: -56.94 6.87 -50.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390058651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.347 kcal (2) G-P(sol) polarization free energy of solvation -56.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds